PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.H00055.1.p

Common Name

EUGRSUZ_H00055, LOC104456029

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

G2-like

Protein Properties

Length: 314aa MW: 33816.3 Da PI: 6.5119

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.H00055.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.2	1.9e-33	49	103	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLH+rFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl Eucgr.H00055.1.p 49 KPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKFRL 103 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.639	46	106	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.5E-32	46	104	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.1E-24	49	104	IPR006447	Myb domain, plants
SuperFamily	SSF46689	8.42E-17	49	105	IPR009057	Homeodomain-like
Pfam	PF00249	1.5E-7	51	101	IPR001005	SANT/Myb domain
Pfam	PF14379	1.6E-27	146	191	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010628	Biological Process	positive regulation of gene expression
GO:0016036	Biological Process	cellular response to phosphate starvation
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MYQALHSLPL DGGGVGVGVG PSGDFRGDFD GAGHGLAGDA CLVLTADPKP RLRWTAELHD 60 RFVDAVTQLG GPDKATPKTI MRTMGVKGLT LYHLKSHLQK FRLGKQSGKD SSGNSKDAPC 120 DTDSLNTGSS ATSSSGILTQ ELNDYRVTEA LRVQMEVQRR LHEQLEVQRH LQLRIEAQGK 180 YLQSILEKAC KVLNDQVAVP AGLEEARDEL SELAIKVSND YPGVRAVDTL KMPCFSELAA 240 ALDSTSLSGL PSWLGDGSAE SCLTSLDSSI SPNAIGSHVI SVKKRLRPVF GNRELLPMES 300 STQKQVDWMM NNM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	5e-19	49	105	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-19	49	105	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-19	49	105	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-19	49	105	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00378	DAP	Transfer from AT3G24120	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.H00055.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK119588	4e-33	AK119588.1 Oryza sativa Japonica Group cDNA clone:002-117-C12, full insert sequence.
GenBank	CT841760	4e-33	CT841760.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C103B02, full insert sequence.
GenBank	KJ728052	4e-33	KJ728052.1 Zea mays clone pUT6198 G2-like transcription factor (GLK53) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010069039.1	0.0	PREDICTED: protein PHR1-LIKE 2 isoform X2
Swissprot	Q94A57	1e-117	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A059AUZ1	0.0	A0A059AUZ1_EUCGR; Uncharacterized protein
STRING	XP_010069038.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3515	25	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	1e-106	G2-like family protein

Link Out ? help Back to Top
Phytozome	Eucgr.H00055.1.p
Entrez Gene	104456029

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]