PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Eucgr.G02354.1.p | ||||||||
Common Name | EUGRSUZ_G02354 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 194aa MW: 21807.4 Da PI: 10.3291 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 124.7 | 1e-38 | 31 | 151 | 2 | 132 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaks 93 +gkkdrhski T +g+RdRR+Rls+++ ++fF Lqd+LGfdk+sktieWLl ++ +ike +g + +++++c + ++a+++ Eucgr.G02354.1.p 31 TGKKDRHSKIRTVQGLRDRRIRLSVQVSRKFFGLQDMLGFDKASKTIEWLLSKSRNSIKEVVGRNITKQKDCgG---D--------VKAAQAE 112 79**************************************************************9999999921...2........2223333 PP TCP 94 aakskksqksaasalnlakesrakarararertrekmri 132 a+ +++++++ ++ ++ k+ a++r++arer rek+ + Eucgr.G02354.1.p 113 AEAEHEQEQDVSNRKEKIKSCDARERENARERAREKNPN 151 446667777777777888888888888888888888765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.0E-33 | 31 | 98 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.048 | 33 | 91 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 194 aa Download sequence Send to blast |
TTPPKSRVDA NGVRVADPAK NKKALPRKRN TGKKDRHSKI RTVQGLRDRR IRLSVQVSRK 60 FFGLQDMLGF DKASKTIEWL LSKSRNSIKE VVGRNITKQK DCGGDVKAAQ AEAEAEHEQE 120 QDVSNRKEKI KSCDAREREN ARERAREKNP NASVFSGADG LCAHQQPINN DDSAQEYGQF 180 ASEMDDSLSM IDKL |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Eucgr.G02354.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010068762.1 | 1e-140 | PREDICTED: transcription factor TCP12 | ||||
TrEMBL | A0A059BGH1 | 1e-140 | A0A059BGH1_EUCGR; Uncharacterized protein (Fragment) | ||||
STRING | XP_010068762.1 | 1e-139 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11632 | 25 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G67260.2 | 1e-27 | TCP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Eucgr.G02354.1.p |