PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G01783.1.p
Common NameEUGRSUZ_G01783
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 551aa    MW: 62126 Da    PI: 4.4865
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G01783.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.51.1e-13311354755
                       HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       ++ErrRR+++N+++ +Lr+l+Pk +      Kl+ a+iL  A+eYI +Lq
  Eucgr.G01783.1.p 311 QAERRRRKKLNDRLYNLRSLVPKiS------KLDRASILGDAIEYIMELQ 354
                       68*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.4E-209155IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474595.63E-17303367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.145304353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-15310359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-11311354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16311367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.15E-13312356No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MIIVHTPMER LRPLVGSNGW DFCVLWKLSE DQRLIEWIDC CCAGAEHNEI GNEEFDFPVS  60
PCRDVMFQHP RRTKACELLA QMPSSVPLES GIYAHAFMSY QPKWLNFASS SDSKAEEGTI  120
GTKVLVPFTG GLVELFVTKQ VPEDQQIIGF ITSQFSIPFE ADSLSSVCME TNFSIIPNAL  180
NDLQSRPQMI DPNDHTDSPA QLPENLNLHD ASSDRIHQYE ATIGGSYDTF VANEEMNPSN  240
KLSAMDGFQE MDGAEQMNVD LTEQVNTEWQ GNDEETVKPE NGATKSTSDC SDQNEEDDER  300
NGKQPHSKNL QAERRRRKKL NDRLYNLRSL VPKISKLDRA SILGDAIEYI MELQKQAKEL  360
QDELEEQSDV EDPRNSGSSS NFTVGQPEFF DIGFLSASEK VAFTYQLPGN TQGDGSTRRN  420
RESETAYDKQ QRMEPQVEVR QMDENEFFIK VFGEHRPGGF VRLMEALDSI GLEVTNANVT  480
RFLSLVSNVF TVEKKDSELV EADLLKDSLL ELTRNPTSGW PGLSKAVETG SARNYHGHQH  540
HYHLLHNHLF *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1312319ERRRRKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G01783.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018732776.10.0PREDICTED: transcription factor ABORTED MICROSPORES
TrEMBLA0A059BEM00.0A0A059BEM0_EUCGR; Uncharacterized protein
STRINGXP_010068596.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75892741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-135bHLH family protein