PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.G01185.1.p | ||||||||
Common Name | EUGRSUZ_G01185 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 226aa MW: 24996.5 Da PI: 5.4056 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 71.4 | 7.6e-23 | 23 | 69 | 1 | 47 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 k+i nks +qvtfskRr g++KKA+EL++LC+a++a+i+fs+ k++ Eucgr.G01185.1.p 23 KKITNKSSQQVTFSKRRSGLFKKASELCILCGAQIAIIVFSPVHKIF 69 689**************************************988876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 25.525 | 15 | 75 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.2E-31 | 15 | 74 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.88E-27 | 16 | 91 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.28E-35 | 16 | 83 | No hit | No description |
PRINTS | PR00404 | 4.1E-20 | 17 | 37 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.2E-23 | 24 | 71 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.1E-20 | 37 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.1E-20 | 52 | 73 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MVVVKKLTKT PKPSKGRKKI EIKKITNKSS QQVTFSKRRS GLFKKASELC ILCGAQIAII 60 VFSPVHKIFC FGYPNVDFVI DRYIRETSTD VPQDGGEDVA VDNIVPALHA LNEEYDGVLQ 120 ELARRERSSE ASGSGRFWWD KPLDDDMAAE ELEQYVVAVE ELMQKVAMKA DDMMMRSLLQ 180 PYGATVGTAV NAAEASDADM AVNHLVHENE GKFNDYGQIG GPGFY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-15 | 16 | 109 | 2 | 89 | MEF2C |
5f28_B | 1e-15 | 16 | 109 | 2 | 89 | MEF2C |
5f28_C | 1e-15 | 16 | 109 | 2 | 89 | MEF2C |
5f28_D | 1e-15 | 16 | 109 | 2 | 89 | MEF2C |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.G01185.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018733022.1 | 5e-92 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A059BBR5 | 1e-168 | A0A059BBR5_EUCGR; Uncharacterized protein | ||||
STRING | XP_010068351.1 | 1e-140 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-34 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.G01185.1.p |