PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G00889.1.p
Common NameEUGRSUZ_G00889
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 392aa    MW: 44546.7 Da    PI: 8.8657
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G00889.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.31.2e-17133228199
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                       ffkv ++++++k+   ++p++f+ +h ++    k+++    sgrsW vkl  + ++++     +++GW  Fv+  +L +g ++vF+l++r++ 
  Eucgr.G00889.1.p 133 FFKVVMRPSYMKKE-AYVPRRFIIQHILE--I-KEIVTLRHSGRSWPVKL--WSNPRSvhgAAFSSGWGAFVRGTRLHVGNVCVFELIDRDDI 219
                       78888888888877.799********444..2.35777778*********..888888788999************************99999 PP

                       ..EEEEE-S CS
                B3  91 elvvkvfrk 99 
                        ++v +f++
  Eucgr.G00889.1.p 220 VFRVYIFSS 228
                       889999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508636.315130IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.6E-5342IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.5E-22125229IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-21127229IPR015300DNA-binding pseudobarrel domain
CDDcd100171.83E-17132227No hitNo description
PROSITE profilePS5086311.335132229IPR003340B3 DNA binding domain
PfamPF023626.9E-16133228IPR003340B3 DNA binding domain
SMARTSM010192.1E-11134229IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.7E-4263311IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MQHYSIGHGH LIVFKYKGSS TFRVMIFNKS SSEIDYSSSS ISNLGSGFIS PEWEDVIEME  60
DSEDSASHQK MRVEPHSPCS QLSPSCSSQD LEDGAGQSRS RASHSKPVSG GSMSPWPLSS  120
FELASKFDSE YPFFKVVMRP SYMKKEAYVP RRFIIQHILE IKEIVTLRHS GRSWPVKLWS  180
NPRSVHGAAF SSGWGAFVRG TRLHVGNVCV FELIDRDDIV FRVYIFSSKG TCKQSKCRVN  240
HLEPVFHDPA PPRPLTTPEL ARDFDSEHPF FKLVIRECHL KTLSVPDRFI RQHIRENKGT  300
ATLRYSDRSW PEMPACLSSS IGKIMCSKSP SSATAVRTRF TLIEVITGHV TIGCLQRRCK  360
SRISNYASSI QQWQIDETET LFCSWFLVFW W*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G00889.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010068262.10.0PREDICTED: B3 domain-containing transcription factor VRN1
TrEMBLA0A059BC570.0A0A059BC57_EUCGR; Uncharacterized protein
STRINGXP_010068262.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3457922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.13e-13related to vernalization1 1