PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F04055.1.p
Common NameEUGRSUZ_F04055, LOC104450718
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family G2-like
Protein Properties Length: 499aa    MW: 54973.2 Da    PI: 5.8192
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F04055.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.71.1e-32264318155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       kpr+rWtpeLH rFv+av++L G+ekAtPk +l+lm+v+gLt++hvkSHLQkYRl
  Eucgr.F04055.1.p 264 KPRMRWTPELHVRFVDAVNKLDGAEKATPKGVLKLMNVEGLTIYHVKSHLQKYRL 318
                       79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.275261321IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.2E-31262319IPR009057Homeodomain-like
SuperFamilySSF466891.97E-17263318IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-24264319IPR006447Myb domain, plants
PfamPF002492.2E-8266317IPR001005SANT/Myb domain
PfamPF143797.8E-23355401IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MNGHSITLPQ SGSTKGMKNS HYTGMSLDHR FLNAESEGIS KASGWSSSSP SPLIRVEPLN  60
LNLSRESTFP SHKTCSESSP SSPLSLASHV QTPKSTYSRS SVFCTSLYQS SSSTSEAHKH  120
LRSLPFLPHP PAYNQSVSAI DSKSSSLFSE DISNLDDEKH TESLMTDFLG FPGDTSDGSF  180
NGIDCASDDL MLTDQLELQY LSDELDLAIT DNADTPNLDD IYEAHLPPSK QETELVCQQK  240
CHSPLPAIDS VSSQPSSGPA AAHKPRMRWT PELHVRFVDA VNKLDGAEKA TPKGVLKLMN  300
VEGLTIYHVK SHLQKYRLAK YMPEKKEEKK GGSSEEKKAM SYGNESDGRR KGSTQITEAL  360
RMQMEVQKQL HEQLEVQREL QLRIEEHARY LQKILEEQQK AGVVLTCPQK MSSSEDACPE  420
SELRPSSPTV AASLPWPAES KYNPRVLSLK NKASESSGTE SHECQQKRIR IEEKAESTSV  480
SDEAVVDTQS EVTQVQSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A7e-25264321259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B7e-25264321259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A7e-25264321259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C7e-25264321259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D7e-25264321259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F7e-25264321259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H7e-25264321259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J7e-25264321259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00354DAPTransfer from AT3G13040Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F04055.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010063696.10.0PREDICTED: myb family transcription factor PHL6
SwissprotQ949U21e-128PHL6_ARATH; Myb family transcription factor PHL6
TrEMBLA0A059BXL90.0A0A059BXL9_EUCGR; Uncharacterized protein
STRINGXP_010063696.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67862744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.21e-116G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]