PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.F03951.1.p | ||||||||
Common Name | EUGRSUZ_F03951, LOC104450619 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | C2H2 | ||||||||
Protein Properties | Length: 244aa MW: 26887.7 Da PI: 8.0602 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.7 | 0.00019 | 71 | 93 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Eucgr.F03951.1.p 71 FSCNYCQRKFYSSQALGGHQNAH 93 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.02E-6 | 67 | 98 | No hit | No description |
PROSITE profile | PS50157 | 11.427 | 71 | 98 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 73 | 93 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MEFHQVGNRS RDDHRNADEP LTNPDLVLDL SLSNKASDHA PKQEVTSIHC FEAHSPPNDV 60 PQDNETEARV FSCNYCQRKF YSSQALGGHQ NAHKRERTLA KRGQRIGSAT TANFSYPYSH 120 LNHYSSMASL PLHGSYFSRS PGIQVHSMIR KSPFFSSNNG SSHVFGHDGW FGQAIDQKPA 180 ARCVAQTNPH DGAALGSSSD SARLDGIQKF SSASKGIDEL WSNVGYLKSK PDEMKQIDLS 240 LKL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.F03951.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010063554.1 | 0.0 | PREDICTED: zinc finger protein 1 | ||||
TrEMBL | A0A059BXE7 | 0.0 | A0A059BXE7_EUCGR; Uncharacterized protein | ||||
STRING | XP_010063554.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1893 | 27 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10970.1 | 2e-36 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.F03951.1.p |
Entrez Gene | 104450619 |