PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F02171.1.p
Common NameEUGRSUZ_F02171, LOC104449203
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 369aa    MW: 41188.5 Da    PI: 4.6395
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F02171.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.68.3e-12202245654
                       HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                        ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Eucgr.F02171.1.p 202 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYVKEL 245
                       589*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.447196245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-15199265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-9202245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-12202251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.47E-5203250No hitNo description
Gene3DG3DSA:4.10.280.102.8E-15203258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048739.04E-4294335No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MEHYEQHGLL EELLGPQRSQ DHLFGTIPTE MNELSSNAWA FDHRCFGESS SLFSPSQPFP  60
VSPSQPFPVS LDQDDLNSLC FSFGNEYPFL QQPHMMSDSS YSPVTGPQFT DSSYSPHEID  120
AGVQEDQCPL NPLMQEDEPG PVPLLTVTDN FQSLNLQQAT CKIEPLHQES PAPPPVVFNM  180
GGSCLEGKSR ARKLEGQPSK NLMAERRRRK RLNDRLSMLR SIVPKISKMD RTSILGDTID  240
YVKELLDKIS SLQQESELDL KQLNVLAPLK EMKPNEMSVR NSPQFQVEKR NEDTKIEICC  300
AGKPGLLLST ISTMEALGLE IEHCVISCFN DFAIQASCSE GLEQRNLVSS EDMKQALFRN  360
AGYGGRCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204211ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F02171.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010061569.10.0PREDICTED: transcription factor bHLH93
SwissprotQ9LSL13e-81BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A059BRI60.0A0A059BRI6_EUCGR; Uncharacterized protein
STRINGXP_010061569.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20432878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.14e-83beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]