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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.F01779.1.p | ||||||||
Common Name | EUGRSUZ_F01779 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | Nin-like | ||||||||
Protein Properties | Length: 659aa MW: 73060.9 Da PI: 6.598 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 93.8 | 1.2e-29 | 328 | 379 | 1 | 52 |
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek i+l++l++yF++++kdAAk+Lgvc+T+LKriCRq+GIkRWP+Rkik++ Eucgr.F01779.1.p 328 AEKAITLQVLRQYFAGSLKDAAKSLGVCPTTLKRICRQHGIKRWPSRKIKKV 379 5899**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.564 | 318 | 399 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 3.6E-26 | 332 | 379 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 7.85E-21 | 548 | 639 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 6.4E-20 | 552 | 635 | No hit | No description |
SMART | SM00666 | 4.2E-18 | 554 | 637 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 22.372 | 554 | 637 | IPR000270 | PB1 domain |
CDD | cd06407 | 2.53E-36 | 555 | 635 | No hit | No description |
Pfam | PF00564 | 6.1E-14 | 555 | 636 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 659 aa Download sequence Send to blast |
MTTQKIQYRP EIQSVCKALE AFDLRSSEVF GNLSEESHWK SYEAAIPEIR EVLRSACETH 60 GLPLAQTWVP CSQQGKGGCR HSNENYVHCV STIDHACHVA DPLLQPFHEA CSEHHLLKGQ 120 GVVGRAFQTN QPCFSSDITS SGRTEYPLSH HARMFGLCAA VAIRLRSIHT GTADFVLEFF 180 LPMDCKDHDK QKKMLGSLSI IIQQVCQSLR VITNEELEEE TVLPEIPVPS EGRPQGEWSL 240 EVESNYLERC SEEDLSWSAH VEKVQQSDTV ASATQKARAG ESFVEKSLDF GQFQDSSTER 300 GEDCSFYGEG RCSDAAREKT GDKKRTKAEK AITLQVLRQY FAGSLKDAAK SLGVCPTTLK 360 RICRQHGIKR WPSRKIKKVG HSLQKLQLVM DTVRVQGAPG PLQIDSFYTN FPELASPNLS 420 ITSPLSASNH GDHLQPLGTQ PGALNFDSCA AVSKSTSSSC SHSSSSSQCC SSGTKQHPSI 480 VDLVAEEDHL VSENNVDITP SKMVQSHVEL QGSSQEEQKL LPRSQSRRSF NPNMENPPRP 540 PPQYNCQASR EGDPLRVKVA CADENIRFRM QKDWDLKDLW GEIARRFCIE DTSKFDLKYL 600 DDDSEWVLLT CDADLDECID VSRSSPGSTV KLSVRKSHHR RLGSSLGSSG PPRMHGAS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.F01779.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010061177.1 | 0.0 | PREDICTED: protein NLP4 isoform X2 | ||||
Refseq | XP_010061178.1 | 0.0 | PREDICTED: protein NLP4 isoform X2 | ||||
Refseq | XP_018731558.1 | 0.0 | PREDICTED: protein NLP4 isoform X2 | ||||
Refseq | XP_018731559.1 | 0.0 | PREDICTED: protein NLP4 isoform X2 | ||||
Refseq | XP_018731560.1 | 0.0 | PREDICTED: protein NLP4 isoform X2 | ||||
Refseq | XP_018731561.1 | 0.0 | PREDICTED: protein NLP4 isoform X2 | ||||
Refseq | XP_018731562.1 | 0.0 | PREDICTED: protein NLP4 isoform X2 | ||||
Refseq | XP_018731563.1 | 0.0 | PREDICTED: protein NLP4 isoform X2 | ||||
TrEMBL | A0A059BPH8 | 0.0 | A0A059BPH8_EUCGR; Uncharacterized protein | ||||
STRING | XP_010061177.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3461 | 26 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35270.1 | 1e-146 | Nin-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.F01779.1.p |