PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F01615.1.p
Common NameEUGRSUZ_F01615, LOC104448801
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MIKC_MADS
Protein Properties Length: 234aa    MW: 26704.5 Da    PI: 9.533
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F01615.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.58.8e-29959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      k ien++nrqvt+skRrng++KKA+EL vLCda+v++i++sstgkl+ey+s
  Eucgr.F01615.1.p  9 KLIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEYIS 59
                      569**********************************************86 PP
2K-box90.14.2e-3071168198
             K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                       yq++  ++l+++++e++q++l+kLk+ +++Lq e R++ Ge+L+ +sl eL  Leq+++++++ iR++K++ l +qi++ +kk+k+++e+nk+
  Eucgr.F01615.1.p  71 YQQALEVDLWSSHYEKMQENLRKLKEVNKKLQLEVRRRFGEGLNGMSLSELCGLEQDMDNAVSLIRERKYKTLGNQIDTARKKKKNAEEINKS 163
                       67778889************************************************************************************* PP

             K-box  94 Lrkkl 98 
                       L + +
  Eucgr.F01615.1.p 164 LLQDW 168
                       *9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.6E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.118161IPR002100Transcription factor, MADS-box
CDDcd002654.49E-38280No hitNo description
SuperFamilySSF554553.14E-36395IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-27323IPR002100Transcription factor, MADS-box
PfamPF003192.8E-241157IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-273859IPR002100Transcription factor, MADS-box
PfamPF014865.3E-2082166IPR002487Transcription factor, K-box
PROSITE profilePS5129714.20484178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MARGKIQIKL IENTTNRQVT YSKRRNGLFK KANELTVLCD AKVSIIMISS TGKLHEYISP  60
STSTKKMYDQ YQQALEVDLW SSHYEKMQEN LRKLKEVNKK LQLEVRRRFG EGLNGMSLSE  120
LCGLEQDMDN AVSLIRERKY KTLGNQIDTA RKKKKNAEEI NKSLLQDWTN LIKHLREDDP  180
HFGMVDNGRD YEAVIGYTDA AAAARLYTLR LQPDQPNLTS GGGSEITTYP LLE*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00077ChIP-seqTransfer from AT3G54340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F01615.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010061014.11e-174PREDICTED: floral homeotic protein DEFICIENS
SwissprotP237061e-101DEFA_ANTMA; Floral homeotic protein DEFICIENS
TrEMBLA0A059BPV31e-172A0A059BPV3_EUCGR; Uncharacterized protein
STRINGXP_010061014.11e-173(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52612750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.18e-87MIKC_MADS family protein
Publications ? help Back to Top
  1. Schwarz-Sommer Z, et al.
    Characterization of the Antirrhinum floral homeotic MADS-box gene deficiens: evidence for DNA binding and autoregulation of its persistent expression throughout flower development.
    EMBO J., 1992. 11(1): p. 251-63
    [PMID:1346760]
  2. Sommer H, et al.
    Deficiens, a homeotic gene involved in the control of flower morphogenesis in Antirrhinum majus: the protein shows homology to transcription factors.
    EMBO J., 1990. 9(3): p. 605-13
    [PMID:1968830]
  3. Gallois JL, et al.
    Functional characterization of the plant ubiquitin regulatory X (UBX) domain-containing protein AtPUX7 in Arabidopsis thaliana.
    Gene, 2013. 526(2): p. 299-308
    [PMID:23747397]
  4. Davies B,Egea-Cortines M,de Andrade Silva E,Saedler H,Sommer H
    Multiple interactions amongst floral homeotic MADS box proteins.
    EMBO J., 1996. 15(16): p. 4330-43
    [PMID:8861961]