PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F01569.1.p
Common NameEUGRSUZ_F01569, LOC104448758
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 98aa    MW: 11024.4 Da    PI: 8.4704
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F01569.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-07652346
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                       WT+   +l+ +a + +  +   +W   ar +g +++ +++k ++ +
  Eucgr.F01569.1.p  6 TWTPKQNKLFENALAIYDRDapdRWQNLARAVGGNKSVEDVKRHYEM 52
                      7*****************99*************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.869258IPR017884SANT domain
SMARTSM007171.6E-6356IPR001005SANT/Myb domain
SuperFamilySSF466894.29E-11561IPR009057Homeodomain-like
CDDcd001671.83E-5654No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MSSGSTWTPK QNKLFENALA IYDRDAPDRW QNLARAVGGN KSVEDVKRHY EMLVEDVNQI  60
EAGQVPLPNY RKLAGPNSKG CSSFMDEEQR LKSLRIQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-29397793RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F01569.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010060952.13e-68PREDICTED: protein RADIALIS-like 3
SwissprotF4JVB82e-32RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A059BP087e-67A0A059BP08_EUCGR; Uncharacterized protein
STRINGXP_010060952.11e-67(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.16e-35RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]