PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Eucgr.F00114.1.p | ||||||||
Common Name | EUGRSUZ_F00114 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 279aa MW: 28218.7 Da PI: 9.5646 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.6 | 0.00042 | 105 | 127 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC Cgk F++ L H +H Eucgr.F00114.1.p 105 YKCAVCGKGFPSYQALGGHKASH 127 9***********99999998887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.367 | 105 | 132 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.0E-12 | 105 | 129 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.037 | 105 | 127 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 2.7E-9 | 105 | 127 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 107 | 127 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.7E-9 | 169 | 196 | No hit | No description |
PROSITE profile | PS50157 | 9.411 | 174 | 196 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.6E-13 | 174 | 198 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.19 | 174 | 196 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 176 | 196 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 279 aa Download sequence Send to blast |
MALEAINSPT AASAPFQFME EPLSSRFLEP LNKRKRSKRP HHPPSEDEYL ALCLIMLARS 60 GAAPKPNHHA SPAPLPPPPP PAPTKPEEAA ATATATAAPA NNLSYKCAVC GKGFPSYQAL 120 GGHKASHRKS AAAAAAAAAA AAASSAGADE PSTSATNSGG GAAAASSSGG GRSHECSICH 180 KSFPTGQALG GHKRCHYDGG ASGSANSGVT TSEGRPPQLR PERARAAGVP DRVHRVGRRR 240 GGEPPPLEEA ALLDAPEDQA LSRTVKSLPV LLGLALVN* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 31 | 38 | NKRKRSKR |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Eucgr.F00114.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018732227.1 | 1e-103 | PREDICTED: zinc finger protein ZAT10 | ||||
TrEMBL | A0A059BJQ9 | 0.0 | A0A059BJQ9_EUCGR; Uncharacterized protein | ||||
STRING | XP_010059845.1 | 1e-102 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6618 | 24 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G67450.1 | 2e-31 | zinc-finger protein 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Eucgr.F00114.1.p |