PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F00097.1.p
Common NameEUGRSUZ_F00097, LOC104447797
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRF
Protein Properties Length: 606aa    MW: 64630.9 Da    PI: 8.9109
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F00097.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.11.8e-24224268145
               WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                       d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  Eucgr.F00097.1.p 224 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 268
                       79****************************************985 PP
2QLQ57.44.4e-20154190137
               QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                       ++FT++Q+++L++Q+l+yKy+ ++ P+P++Ll +i+k
  Eucgr.F00097.1.p 154 GPFTPSQWMELEHQALIYKYITSSIPIPSNLLIPIRK 190
                       59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.1E-11154190IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.429155190IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.8E-14155189IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.663224268IPR014977WRC domain
PfamPF088797.2E-21225267IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MDFGTVSLDG LVGTDPGGGL PPHASDPGAK HKLYGSGLFK QERSSAASSA EDEWRSSKLV  60
KTDDFSAPKA MLPPQRSPTT SLRSNNSIGL FPSDGQQMLS FSSPKSDALP NSHAPALSSY  120
FNYAPPLCSN YAGFNSAASL NGTSMQGVLA GARGPFTPSQ WMELEHQALI YKYITSSIPI  180
PSNLLIPIRK AFDSAGFSCY PGGLLRSNSL GWGSFHLGFS NTSDPEPGRC RRTDGKKWRC  240
SRDAVADQKY CERHMNRGRH RSRKPVEGQT GHPVSGATNT TSSTKQLPAA PSASAPTVVP  300
SGGASNSLNI AHQQVKNLQH GVLNLNGDAS MRRYFTDKGS AGEKMQNPPS LSMLSPTYDS  360
NSKGNAFMIM KEQFGLGNSG SYLNASVKNS SLLDSRNYGS SRDLGNQDSE SHHSVRQFMD  420
DWPVNPADRS AMSWPEIDMQ SDRTHLSISI PMSTSDLISA TSSPNHEKAM PSPLRLSHKS  480
DPVQMNLGVG SFFSEPTHKQ SNSLPISWET SMGGPLGEVL HHRSNSASEG KNAAVLNLMK  540
DGWDGSPPLG SSPTGVLQKT TFRSLSNSSA GSSPRAENAK THEGMALCND LLGSTLMNSS  600
SLPAM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F00097.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4733683e-63AM473368.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X262323.6, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010059815.10.0PREDICTED: growth-regulating factor 6
TrEMBLA0A059BJP20.0A0A059BJP2_EUCGR; Uncharacterized protein
STRINGXP_010059815.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14542886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.12e-81growth-regulating factor 1