PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E01947.1.p
Common NameEUGRSUZ_E01947
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 149aa    MW: 16993.7 Da    PI: 7.0289
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E01947.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.81.4e-1136126279
                       EEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS............-EE.EEEE..EEETTEEEE-TTH.HHHHHHHT--TT CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesg............rsW.evkliyrkksgryvltkGW.keFvkangLkeg 77 
                        k+lt sd + +++l lp  ++++h   +++  e++  ++++++g            + W  +++  +++sg+yvl +GW keFv+ ++Lk+g
  Eucgr.E01947.1.p  36 MKELTESDLSHLSWLLLPGGCLKTHvfpQMD--EEMLRKVKSKEGmqvvgidvdtgwKHWfVFRC--WGSSGSYVLNGGWtKEFVEKKRLKVG 124
                       5899**********************88444..33445555555566666666656755514667..*************668********** PP

                       -E CS
                B3  78 Df 79 
                       D 
  Eucgr.E01947.1.p 125 DE 126
                       *4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-1630137IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-1730143IPR015300DNA-binding pseudobarrel domain
CDDcd100178.42E-1533143No hitNo description
PfamPF023621.0E-836127IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MKTPESSTSD VAHCVCAERV DVSTELVLQN DPWMIMKELT ESDLSHLSWL LLPGGCLKTH  60
VFPQMDEEML RKVKSKEGMQ VVGIDVDTGW KHWFVFRCWG SSGSYVLNGG WTKEFVEKKR  120
LKVGDEIGMV WFMSSRMFYF KVLHRAAA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E01947.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058733.11e-106PREDICTED: B3 domain-containing protein At2g33720-like
TrEMBLA0A059C5N51e-105A0A059C5N5_EUCGR; Uncharacterized protein
STRINGXP_010058733.11e-106(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM456952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.11e-19B3 family protein