PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.D02320.1.p | ||||||||
Common Name | EUGRSUZ_D02320, LOC104442131 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB_related | ||||||||
Protein Properties | Length: 328aa MW: 35536.1 Da PI: 9.8303 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.1 | 9.8e-14 | 58 | 102 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++++++a +++ + Wk+I + +g +t q++s+ qky Eucgr.D02320.1.p 58 RESWTEQEHDKFLEALHLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 102 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.27E-16 | 52 | 108 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.543 | 53 | 107 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-6 | 56 | 108 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.7E-18 | 56 | 105 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 3.9E-11 | 57 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-11 | 58 | 102 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.18E-8 | 60 | 103 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MVSVNPNPAQ GFYFFDPANT GIRGVNAGSA AEGGGAAPPY AEDPSKKVRK PYTITKSRES 60 WTEQEHDKFL EALHLFDRDW KKIEAFVGSK TVIQIRSHAQ KYFLKVQKNG TSEHVPPPRP 120 KRKAAHPYPQ KAPKAPVVSQ VNGPFQVSSA FLEPGHIVRP DGSALLGNSR TSVALSSWSH 180 NSVPAMSASQ GTKDVGISGP PVPSNCCNSS SNDSTPRSWP NAQAIEPLDQ QKHLRVMPDF 240 AQVYRFIGSV FDPDAGGHLQ RLKQMDPINL ETVVLLMKNL SANLTSPEFE KYQQGLFASY 300 EGGPEKSKSG GSFKLLPEKS GSLILSA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00423 | DAP | Transfer from AT4G01280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.D02320.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010053757.1 | 0.0 | PREDICTED: protein REVEILLE 5 isoform X1 | ||||
Swissprot | C0SVG5 | 1e-105 | RVE5_ARATH; Protein REVEILLE 5 | ||||
TrEMBL | A0A059CJK4 | 0.0 | A0A059CJK4_EUCGR; Uncharacterized protein | ||||
STRING | XP_010053757.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1290 | 28 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01280.2 | 1e-85 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.D02320.1.p |
Entrez Gene | 104442131 |
Publications ? help Back to Top | |||
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