PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.D02182.1.p
Common NameEUGRSUZ_D02182, LOC104442007
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 358aa    MW: 40121.6 Da    PI: 4.5288
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.D02182.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.88.9e-5361331128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                       lppGfrFhPtdeelv +yLk+k+eg  +el evi+ +d+yk++Pw+Lp k  + +++ ew+fF++rd+ky++g+r+nratk+gyWkatgkd++
  Eucgr.D02182.1.p   6 LPPGFRFHPTDEELVGYYLKRKTEGLGFEL-EVIPVIDLYKFDPWELPeKsFLPNRDMEWFFFCPRDRKYPNGSRSNRATKAGYWKATGKDRK 97 
                       79****************************.99**************95334556888*********************************** PP

               NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       v++ +++++g +ktLvfy+grap g +tdWvmheyrl
  Eucgr.D02182.1.p  98 VVC-QSSVTGYRKTLVFYRGRAPLGDRTDWVMHEYRL 133
                       ***.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.19E-614156IPR003441NAC domain
PROSITE profilePS5100557.9646156IPR003441NAC domain
PfamPF023655.2E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MGGASLPPGF RFHPTDEELV GYYLKRKTEG LGFELEVIPV IDLYKFDPWE LPEKSFLPNR  60
DMEWFFFCPR DRKYPNGSRS NRATKAGYWK ATGKDRKVVC QSSVTGYRKT LVFYRGRAPL  120
GDRTDWVMHE YRLSDELPQG SLGSQGAFAL CRVIKKNEQG LKTSDSNGEP KGKRVGSYLS  180
PVDITSINIS SDIPSTSNDI SSQNSGLYDE SRNSSPAPPP EIVEIADTEP ASMENNLASI  240
WQYPQEQGLE FQYFSQHEIP SSVASWHLTN NIETSSCLAY SDFIGEVELA EEPGQISCMS  300
PYSGHENYAR FCQYEEISYE AYGIWEQSPI CRQASGDGGS GDIGNLWMQD DNMTIVM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-52516216171NO APICAL MERISTEM PROTEIN
1ut4_B2e-52516216171NO APICAL MERISTEM PROTEIN
1ut7_A2e-52516216171NO APICAL MERISTEM PROTEIN
1ut7_B2e-52516216171NO APICAL MERISTEM PROTEIN
3swm_A2e-52516219174NAC domain-containing protein 19
3swm_B2e-52516219174NAC domain-containing protein 19
3swm_C2e-52516219174NAC domain-containing protein 19
3swm_D2e-52516219174NAC domain-containing protein 19
3swp_A2e-52516219174NAC domain-containing protein 19
3swp_B2e-52516219174NAC domain-containing protein 19
3swp_C2e-52516219174NAC domain-containing protein 19
3swp_D2e-52516219174NAC domain-containing protein 19
4dul_A2e-52516216171NAC domain-containing protein 19
4dul_B2e-52516216171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.D02182.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053592.10.0PREDICTED: NAC domain-containing protein 86
SwissprotO496973e-90NAC71_ARATH; NAC domain-containing protein 71
TrEMBLA0A059CIF90.0A0A059CIF9_EUCGR; Uncharacterized protein
STRINGXP_010053592.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21512777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.11e-92NAC domain containing protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]