PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.D00312.1.p
Common NameEUGRSUZ_D00312, LOC104442540
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family M-type_MADS
Protein Properties Length: 187aa    MW: 21034.1 Da    PI: 8.0584
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.D00312.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.23.3e-211253445
                      -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
            SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                       ++  rqvtfskRr+g++KKA+EL +LC++++a+i+fs+ gk
  Eucgr.D00312.1.p 12 TDSCTRQVTFSKRRTGLFKKANELAILCAVQIAIIVFSPGGK 53
                      57889**********************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.511161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.71E-27172IPR002100Transcription factor, MADS-box
SMARTSM004328.9E-32160IPR002100Transcription factor, MADS-box
CDDcd002651.12E-32275No hitNo description
PRINTSPR004045.3E-19323IPR002100Transcription factor, MADS-box
PfamPF003194.1E-231257IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-192338IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-193859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MGRRKIEIEL VTDSCTRQVT FSKRRTGLFK KANELAILCA VQIAIIVFSP GGKPFSFGHP  60
NVESIVHRFL NQEKAPDEGT SKDAESRDES KTDDNLNQQI LDLLKRLNAE EKRGEMLEKA  120
LKAKRAAKGQ PPIDQLGLPE LGQLKRSLED LREKLKDCID EKEVLSAILL LSEQQPKKEN  180
QSENWV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-15183183MEF2C
5f28_B2e-15183183MEF2C
5f28_C2e-15183183MEF2C
5f28_D2e-15183183MEF2C
6byy_A1e-15183183MEF2 CHIMERA
6byy_B1e-15183183MEF2 CHIMERA
6byy_C1e-15183183MEF2 CHIMERA
6byy_D1e-15183183MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.D00312.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010054262.11e-133PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLA0A059CCK21e-131A0A059CCK2_EUCGR; Uncharacterized protein
STRINGXP_010054262.11e-132(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.16e-37AGAMOUS-like 29