PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C02660.1.p
Common NameEUGRSUZ_C02660, LOC104437598
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 289aa    MW: 32409.5 Da    PI: 8.696
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C02660.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.19.9e-30138197159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       ++Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+rs +dp++++ tYegeHnh+
  Eucgr.C02660.1.p 138 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApSCPVKKKVQRSVDDPSLLVATYEGEHNHR 197
                       58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081126.727133199IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.5E-29133199IPR003657WRKY domain
SuperFamilySSF1182901.57E-25135199IPR003657WRKY domain
SMARTSM007745.7E-34138198IPR003657WRKY domain
PfamPF031062.2E-24139197IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009751Biological Processresponse to salicylic acid
GO:0031347Biological Processregulation of defense response
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MDTRVDTSLD LRINSFQNCN SSVMDLRRDR GGFAEKSQEV GTLQQDVGVS MEEFRRMSSE  60
NKKLTETLNV VLLGYNALHS QMINLAQGIS SNEAIESRKR KFEDYIDLDF WKRPTESMKS  120
RTSVAYFQVD PSDTSLVVKD GYQWRKYGQK VTRDNPSPRA YFKCSFAPSC PVKKKVQRSV  180
DDPSLLVATY EGEHNHRCPP QGAKPPSVSP PISPSSMKPS NQNPVLDFVR CGFSNLAMKS  240
KQETEVGTPP QFLVQEMVSS LTRDPNFTAS LAEAISGAML DRSRTQSW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-211372001375WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00068PBMTransfer from AT2G25000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C02660.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010048883.10.0PREDICTED: probable WRKY transcription factor 60
TrEMBLA0A059CTM00.0A0A059CTM0_EUCGR; Uncharacterized protein
STRINGXP_010048883.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65841945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25000.13e-64WRKY DNA-binding protein 60