PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.C02208.1.p | ||||||||
Common Name | EUGRSUZ_C02208, LOC104437326 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | bHLH | ||||||||
Protein Properties | Length: 252aa MW: 28263.3 Da PI: 9.5922 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.4 | 2.6e-13 | 62 | 104 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 Er+RR+++N++++ Lr ++P+ + K++Ka+i + A++YI++L Eucgr.C02208.1.p 62 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIDYIQEL 104 57*********************66......****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.526 | 55 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-17 | 58 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.99E-12 | 58 | 109 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.1E-16 | 61 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.7E-15 | 61 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.2E-11 | 62 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MLRNTRTIGR RPCSTKMKSS TDHHIRKSLE NYGSWVDEAI SGYYDSSSPD GAASTAASKN 60 IVSERNRRKK LNERLFALRA VVPNISKMDK ASIIKDAIDY IQELHDQERR IQAEILELES 120 GKLKKGSGGY DFDQDLPAYL RSKKKRTDAF YDSGGSRISP IEVLELRITY MGEKTLVVSL 180 TCSKRTDTMV KLCEVFESLK LKIITANITS FSGRLLKTVF IEADENEKEN LKTKIETAIA 240 ALNDPQSPMS I* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 4e-14 | 60 | 120 | 9 | 69 | Transcription factor MYC2 |
5gnj_B | 4e-14 | 60 | 120 | 9 | 69 | Transcription factor MYC2 |
5gnj_E | 4e-14 | 60 | 120 | 9 | 69 | Transcription factor MYC2 |
5gnj_F | 4e-14 | 60 | 120 | 9 | 69 | Transcription factor MYC2 |
5gnj_G | 4e-14 | 60 | 120 | 9 | 69 | Transcription factor MYC2 |
5gnj_I | 4e-14 | 60 | 120 | 9 | 69 | Transcription factor MYC2 |
5gnj_M | 4e-14 | 60 | 120 | 9 | 69 | Transcription factor MYC2 |
5gnj_N | 4e-14 | 60 | 120 | 9 | 69 | Transcription factor MYC2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.C02208.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010048564.1 | 0.0 | PREDICTED: transcription factor bHLH35 isoform X2 | ||||
Swissprot | Q2HIV9 | 3e-92 | BH035_ARATH; Transcription factor bHLH35 | ||||
TrEMBL | A0A059CRK7 | 0.0 | A0A059CRK7_EUCGR; Uncharacterized protein | ||||
STRING | XP_010048564.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6367 | 27 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.1 | 5e-93 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.C02208.1.p |
Entrez Gene | 104437326 |