PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C01586.1.p
Common NameEUGRSUZ_C01586, LOC104436948
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 374aa    MW: 40369.6 Da    PI: 6.8619
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C01586.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.46.7e-07158179223
                       EETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                        C  Cgk F+r  nL+ H+r H
  Eucgr.C01586.1.p 158 FCDVCGKGFKRDANLRMHMRAH 179
                       6*******************99 PP
2zf-C2H211.30.0011274289621
                       TTEEESSHHHHHHHHH CS
           zf-C2H2   6 CgksFsrksnLkrHir 21 
                       Cg++Fsrk+ L  H+ 
  Eucgr.C01586.1.p 274 CGTTFSRKDKLFGHMA 289
                       **************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.24E-6154180No hitNo description
PROSITE profilePS5015711.926157184IPR007087Zinc finger, C2H2
SMARTSM003550.002157179IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.0E-6157179IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280159179IPR007087Zinc finger, C2H2
SMARTSM0035540204237IPR015880Zinc finger, C2H2-like
SMARTSM0035529242264IPR015880Zinc finger, C2H2-like
SMARTSM00355200270294IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MNHPISGADR PFPPGPAAAD GNAAAEDPRV PPLLSLAAVR LRLDSVRRLL AQSLGSNTLL  60
SKDQMDMVSA EIASAIHRIV VDGAALFSSS RGSGSDPEPE RSYPKLPVRS PVNPPAAKPP  120
EVEVKAETDE AELEVELESD CEIVELNAAK LLAEHAHFCD VCGKGFKRDA NLRMHMRAHG  180
NQFKTPEALA KPERCADAPR KTRFSCPFEG CSRNKGSNKF RPLKSVICVK NHFKRSHCPK  240
MYACNRCNKK SFSVLADLKS HSKHCGQSRW RCSCGTTFSR KDKLFGHMAL FDGHMPAVAG  300
DHEEKASASG VVAMEDDGDE NAKVEEEELA ANSVDGGFFE GLLDGFGSLD GYSIQDLLNG  360
MGNGMQGFPG VQH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C01586.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010048108.10.0PREDICTED: zinc finger protein STOP1 homolog
TrEMBLA0A059CPE40.0A0A059CPE4_EUCGR; Uncharacterized protein
STRINGXP_010048108.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16077813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.32e-72C2H2 family protein