PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C00823.1.p
Common NameEUGRSUZ_C00823, LOC104436427
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRF
Protein Properties Length: 382aa    MW: 43165.9 Da    PI: 8.4573
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C00823.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC794.4e-2584127144
               WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                       d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e
  Eucgr.C00823.1.p  84 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 127
                       79***************************************997 PP
2QLQ58.12.6e-201347236
               QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                      +FTa+Q+q+L++Q+l+yKyL+++ P+Pp+Ll+ ++
  Eucgr.C00823.1.p 13 PFTASQWQELEHQALIYKYLISGIPIPPDLLFSLK 47
                      8******************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.3E-121248IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.0E-151345IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.0391348IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.9884128IPR014977WRC domain
PfamPF088791.3E-2085127IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MHMMSGGMSS RFPFTASQWQ ELEHQALIYK YLISGIPIPP DLLFSLKRSP SCFDSSHFSP  60
KFLSHQPQHV GWNCFQMGLG KKIDPEPGRC RRTDGKKWRC SKEAYPDSKY CERHMHRGKN  120
RSRKPVEVLS SISSASPTPT PTASITPSNK SPYYSHNPAT NPQSLSSLST SDHSHHNHPN  180
HPHHSYYFSS RPPGNIALSA QDSSTTNFLL DSGSYSQSGQ DYRKNRYLYG LKENHVDEHA  240
FFAEPSGSMR SFSGSSMDDS WQLTPLAMSS SSKQRSCSAL ESDYSYLQLQ SLSDVSKHYK  300
QDVKCELMMP MKMERDEEEP QKTIHRFFDE GPMKSRDNSS WVDVEDNKSS NSSSMSTTKL  360
SISMPSSNDF PAFNSRRNYD G*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C00823.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0098461e-45AP009846.1 Lotus japonicus genomic DNA, clone: LjT02E24, TM1624a, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047491.10.0PREDICTED: growth-regulating factor 1 isoform X1
TrEMBLA0A059CNF00.0A0A059CNF0_EUCGR; Uncharacterized protein
STRINGXP_010047491.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45672651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.13e-53growth-regulating factor 5