PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A02400.1.p
Common NameEUGRSUZ_A02400
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 274aa    MW: 30658.2 Da    PI: 6.7329
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A02400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-05112131120
                       EEETTTTEEESSHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                       ++Cp C k+F+r  n++ H+
  Eucgr.A02400.1.p 112 FSCPVCFKTFNRYNNMQMHM 131
                       89*****************9 PP
2zf-C2H2157.3e-05196218123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       + C +Cgk F  + + ++H +++
  Eucgr.A02400.1.p 196 FMCRKCGKAFAVRGDWRTHEKNC 218
                       89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.9E-585134No hitNo description
SMARTSM003550.38112134IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.6E-6112131IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.64112139IPR007087Zinc finger, C2H2
PROSITE patternPS000280114134IPR007087Zinc finger, C2H2
SuperFamilySSF576671.09E-6178216No hitNo description
Gene3DG3DSA:3.30.160.606.9E-6192216IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549196216IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808196216IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MEVDRPKRSA GAQDEDDDGD QDDDDDDETG VTVALHIGLP SPTAAELASV MMLASSSSSC  60
SSSEIITAHD HHNKPDQEHG VGEDCGYLMS RINKGQYWIP TPSQILIGPT QFSCPVCFKT  120
FNRYNNMQMH MWGHGSQYRK GPESLRGTQP TGMLRLPCYC CAPGCRNNID HPRAKPLKDF  180
RTLQTHYKRK HGIKPFMCRK CGKAFAVRGD WRTHEKNCGK LWYCICGSDF KHKRSLKDHI  240
KAFGSGHAAY GVDRFEEDDE PASEVEQDNE STQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A02400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010057579.10.0PREDICTED: zinc finger protein WIP2
SwissprotQ9SVY11e-141ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A059DIY20.0A0A059DIY2_EUCGR; Uncharacterized protein
STRINGXP_010057579.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-142C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]