PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Eucgr.A01575.1.p | ||||||||
Common Name | EUGRSUZ_A01575, LOC104438645 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 243aa MW: 27489.8 Da PI: 7.8937 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.3 | 1.5e-19 | 65 | 118 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t+eqle Le+ F+++ +++ +++ +L+++lgL+ rq+++WFqNrRa++k Eucgr.A01575.1.p 65 KKKKLTSEQLEMLERSFQEEIKLDPDRKMRLSRELGLQPRQITIWFQNRRARWK 118 56789************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 116.6 | 1.4e-37 | 65 | 155 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kk++l++eq+++LE+sF+ee kL+p+rK++l+reLglqprq+ +WFqnrRAR+ktkqlE+ y+aLk ++da+++e+ rL++ev++L++ ++ Eucgr.A01575.1.p 65 KKKKLTSEQLEMLERSFQEEIKLDPDRKMRLSRELGLQPRQITIWFQNRRARWKTKQLERLYDALKLEFDAVSREKLRLQEEVSRLKAMVS 155 9*************************************************************************************98775 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.71E-20 | 40 | 122 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.362 | 60 | 120 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-17 | 63 | 124 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 5.2E-17 | 65 | 118 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.12E-17 | 65 | 121 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.0E-21 | 67 | 127 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 6.8E-5 | 91 | 100 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 95 | 118 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 6.8E-5 | 100 | 116 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 6.2E-8 | 120 | 154 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010434 | Biological Process | bract formation | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 243 aa Download sequence Send to blast |
MDWHGDLRSF SNVSFPESSI GFLNPSFAQY PGMELKHHHH HHPPPLSSSM AEAHNDVVVA 60 ASMDKKKKLT SEQLEMLERS FQEEIKLDPD RKMRLSRELG LQPRQITIWF QNRRARWKTK 120 QLERLYDALK LEFDAVSREK LRLQEEVSRL KAMVSDIQAA KKKQVSTGYT DISGDETVES 180 ARYSGDIRHC SDLTRGAGGG GGVTPTPSTT QHHPLAGSSY QLFTLQDYES NSYWGVLPSS 240 YP* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 112 | 120 | RRARWKTKQ |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00486 | DAP | Transfer from AT5G03790 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Eucgr.A01575.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010050142.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-13 isoform X2 | ||||
TrEMBL | A0A059DFC4 | 0.0 | A0A059DFC4_EUCGR; Uncharacterized protein | ||||
STRING | XP_010050142.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1660 | 28 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G03790.1 | 8e-48 | homeobox 51 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Eucgr.A01575.1.p |
Entrez Gene | 104438645 |