PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A01421.1.p
Common NameEUGRSUZ_A01421
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HD-ZIP
Protein Properties Length: 219aa    MW: 25294.2 Da    PI: 4.833
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A01421.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.91.3e-212475556
                      SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                        f++eq++ Le++Fe++ +p+ +++ eLA++lgL+ rqV +WFqNrRa++k
  Eucgr.A01421.1.p 24 KGFSDEQIRLLETMFESEAKPDPRRKMELARELGLEPRQVAIWFQNRRARWK 75
                      569************************************************9 PP
2HD-ZIP_I/II115.82.6e-3723113393
       HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                       k+ +s+eq++lLE++Fe+e k +p+rK+elareLgl+prqva+WFqnrRAR+k+kq+E++y++L+++y++l +e e L++e+++L++el++
  Eucgr.A01421.1.p  23 KKGFSDEQIRLLETMFESEAKPDPRRKMELARELGLEPRQVAIWFQNRRARWKSKQVEQEYRVLRASYEKLLAEFECLKTEKQDLENELQK 113
                       889*************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.24E-201278IPR009057Homeodomain-like
PROSITE profilePS5007119.031777IPR001356Homeobox domain
SMARTSM003894.5E-201881IPR001356Homeobox domain
PfamPF000466.4E-192375IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.8E-222584IPR009057Homeodomain-like
CDDcd000863.60E-172678No hitNo description
PRINTSPR000311.2E-64857IPR000047Helix-turn-helix motif
PROSITE patternPS0002705275IPR017970Homeobox, conserved site
PRINTSPR000311.2E-65773IPR000047Helix-turn-helix motif
PfamPF021831.3E-1377118IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MEKSENCTAG NMKKKKGKSK NMKKGFSDEQ IRLLETMFES EAKPDPRRKM ELARELGLEP  60
RQVAIWFQNR RARWKSKQVE QEYRVLRASY EKLLAEFECL KTEKQDLENE LQKLSGMLDK  120
NHGGGRICRE ASNLEDEDTD CKNEANPFGP HESFDQSLIV ASPDDQLNET EKSSEDVRES  180
RDEENCSVAL PEKWSNFGPS DILDYSCSNA APWWNFWT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16977RRARWKSKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A01421.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018729630.11e-161PREDICTED: homeobox-leucine zipper protein ATHB-12-like
TrEMBLA0A059DFB21e-159A0A059DFB2_EUCGR; Uncharacterized protein
STRINGXP_010068823.11e-152(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17513810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.13e-37homeobox 7