PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A00371.1.p
Common NameEUGRSUZ_A00371
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 309aa    MW: 34995 Da    PI: 5.6124
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A00371.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM131.46.6e-41121431128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                       lppGfrF+ tdeel+ +yLk+k+ g++  +  ++i+e+d++++ePw+Lp+   +  + ke+ fF++ ++ky +++r+nr+tk+gyWk tg+  
  Eucgr.A00371.1.p  12 LPPGFRFQATDEELLLDYLKPKILGQPdGRHYDMIPEIDVLEFEPWQLPSlfGHMFSGKELLFFCHLKRKYLNSNRSNRTTKAGYWKPTGEVL 104
                       79*************************6344478***************5343334789********************************** PP

               NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++s  +++++g++ktLvfy+gr pkg++t+W+ hey+l
  Eucgr.A00371.1.p 105 TIVSGdTQAKIGIRKTLVFYEGRMPKGKRTNWLKHEYHL 143
                       ***9856777****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-449168IPR003441NAC domain
PROSITE profilePS5100547.43212168IPR003441NAC domain
PfamPF023651.0E-1913143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MQNTISEVTR SLPPGFRFQA TDEELLLDYL KPKILGQPDG RHYDMIPEID VLEFEPWQLP  60
SLFGHMFSGK ELLFFCHLKR KYLNSNRSNR TTKAGYWKPT GEVLTIVSGD TQAKIGIRKT  120
LVFYEGRMPK GKRTNWLKHE YHLNPKCLGN NHAENEMLPY VVCRIKYKKD KKLMKGRAPT  180
ISPGGYSNSA FTNTNNVSET PMNQEEDHSS YCNNPDNEAA ENREAFDPQP EMSVEELMES  240
LPSSQPLDGN LSYYNTTPAY QPQAAAEEGS SSFFDFSHDN DGNEFGHGYM PSPYSNSAYY  300
SGFDCGNV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-3411756171NO APICAL MERISTEM PROTEIN
1ut4_B8e-3411756171NO APICAL MERISTEM PROTEIN
1ut7_A8e-3411756171NO APICAL MERISTEM PROTEIN
1ut7_B8e-3411756171NO APICAL MERISTEM PROTEIN
4dul_A8e-3411756171NAC domain-containing protein 19
4dul_B8e-3411756171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A00371.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010065034.20.0PREDICTED: NAC domain-containing protein 83
TrEMBLA0A059DCN70.0A0A059DCN7_EUCGR; Uncharacterized protein
STRINGXP_010064577.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16613212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.13e-43NAC transcription factor-like 9