PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A00193.1.p
Common NameEUGRSUZ_A00193
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GATA
Protein Properties Length: 212aa    MW: 22964.4 Da    PI: 10.866
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A00193.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.91.4e-18105139135
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       C+ Cgt+kTplWR gp g+k+LCnaCG++ rkk++
  Eucgr.A00193.1.p 105 CADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKRR 139
                       ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.16399135IPR000679Zinc finger, GATA-type
SMARTSM004012.1E-1299150IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.04E-12101138No hitNo description
Gene3DG3DSA:3.30.50.103.0E-15103139IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.84E-13104139No hitNo description
PROSITE patternPS003440105130IPR000679Zinc finger, GATA-type
PfamPF003201.6E-16105139IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
PPQDHHLPSP SDLPPFWVRF GSSSFLSSWV QQISLQDRFL VPDPDVRRSG VVLFARYLGF  60
LVLRRPRGAA RSCWVPTQMP DPGEKLQGST DCSDGASAAE GKKTCADCGT SKTPLWRGGP  120
AGPKSLCNAC GIRSRKKRRA VIGLNKVGVE IKKAKRSSSG GNGGSLKRRV LAWGREVLMQ  180
RLSDDRQRTK LGEVEQAAVL LMALSYGSVY A*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A00193.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010051898.17e-90PREDICTED: GATA transcription factor 16
SwissprotQ8LG101e-38GAT15_ARATH; GATA transcription factor 15
SwissprotQ9FJ101e-38GAT16_ARATH; GATA transcription factor 16
TrEMBLA0A059DC271e-151A0A059DC27_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010051898.13e-89(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50502652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.14e-41GATA transcription factor 16
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]