PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EuGene.0600010523
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family AP2
Protein Properties Length: 346aa    MW: 37341.1 Da    PI: 10.5341
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EuGene.0600010523genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.12.5e-09148193151
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                        s y+GV+  +++g++ A+I +      rk+ +lg f ++eeAa+a+++a+ 
  EuGene.0600010523 148 SLYRGVSLLRQTGKFHAQINVQ-----RKQLHLGFFFSEEEAARAYDRAAI 193
                        57******************93.....5*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.37E-10148194IPR016177DNA-binding domain
SMARTSM003804.2E-6149214IPR001471AP2/ERF domain
PfamPF008472.7E-4149194IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-10149206IPR001471AP2/ERF domain
PROSITE profilePS5103211.996149208IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MGRYTFDSTT QDAKKTLALN APRTVGKVHV PAPGVTAGTE ADGDSGSGKS VEAPLFGGVY  60
GIGNSQDLRQ SVSESEVGTP GRGAEASQWN KTRTRRVSGS SGSKSPSETD CEQSNNAVKN  120
TRQANGLVHK DLVKNLKAQA RRHESRTSLY RGVSLLRQTG KFHAQINVQR KQLHLGFFFS  180
EEEAARAYDR AAIFKASVEG GAICTNMDIS EYKDEIPMLQ SLTQPELLAL LHEMKVKSNE  240
SSAPSSPRKS LKVKTSANTK SFARNDQHNS GVEHVRVKMP CEPPSSPRFD ALSNAAVVAE  300
DRELMGVAKV AVTAVASIPR PRVIDLHVSK RRRTRLLPRQ APAAA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001416711.11e-139predicted protein
TrEMBLA4RUQ21e-138A4RUQ2_OSTLU; Uncharacterized protein
STRINGABO950041e-139(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP801966