PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcS733179.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

M-type_MADS

Protein Properties

Length: 170aa MW: 19578.1 Da PI: 7.5178

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcS733179.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	57.6	1.6e-18	2	51	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien+ +r +tfskRr gi K A+EL +LC aev v+++s++gk + ++ EcS733179.10 2 KRIENEERRLITFSKRRSGIYKIASELVTLCRAEVGVVVLSPSGKPFSFA 51 79******************************************977765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	6.15E-21	1	69	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	21.194	1	54	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.9E-17	1	53	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.0E-21	3	50	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-7	16	31	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-7	31	52	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MKRIENEERR LITFSKRRSG IYKIASELVT LCRAEVGVVV LSPSGKPFSF AHPSIDTVAN 60 QFLNRNPPPI DGSYALVESN RQARINELNQ QYDELINQIK VEEARNKALK QLTEGKGNDA 120 WWEAPIEELN LEELHQLEVR MEDLRRTLWM SINQRTRGKE SKSIQGQSSD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010059071.1	1e-116	PREDICTED: agamous-like MADS-box protein AGL62
TrEMBL	A0A059C798	1e-115	A0A059C798_EUCGR; Uncharacterized protein
STRING	XP_010059074.1	1e-120	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	1e-30	AGAMOUS-like 62