PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS607847.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 305aa    MW: 33053.1 Da    PI: 7.2143
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS607847.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.73.8e-204292256
           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                  ++ GVr+++ +grWvAeI+d s   +r r +lg+++t+eeAa+a+++a+++l+ge
  EcS607847.10 42 RFVGVRQRP-SGRWVAEIKDSS---QRVRLWLGTYDTPEEAARAYDEAARALRGE 92
                  589******.7*********43...36**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.04E-3242101No hitNo description
Gene3DG3DSA:3.30.730.106.1E-284299IPR001471AP2/ERF domain
SMARTSM003802.6E-3442105IPR001471AP2/ERF domain
PfamPF008473.8E-154292IPR001471AP2/ERF domain
PROSITE profilePS5103220.5344299IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-204399IPR016177DNA-binding domain
PRINTSPR003673.1E-74354IPR001471AP2/ERF domain
PRINTSPR003673.1E-76581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
SETTAKNNQH RHHDDNNNVS ASAAAATAVV AAAPPSKPSF RRFVGVRQRP SGRWVAEIKD  60
SSQRVRLWLG TYDTPEEAAR AYDEAARALR GENARTNFAA APSTMNPNNY HQPDSSSSPS  120
CGYTSQSDYA RPGLSFSSLK AKLSKNLQSI IARSSESKSS KSRVSDHFTF ASIFHFRGYN  180
QYQNPGDIKN IEKVVQPSIV VPSSHVAVDL ESLSSWDNSS VSDCSSIGFR TPGLDSDGSE  240
VGEAIGMAGD QGFLGWIDSP EWNNYSDLGL MSGGELSRSK RFKVSSSVVV PPTFSESPYD  300
NNGEK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1342981471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053650.10.0PREDICTED: ethylene-responsive transcription factor ERF087-like
TrEMBLA0A438HKX91e-113A0A438HKX9_VITVI; Ethylene-responsive transcription factor RAP2-11
STRINGXP_010053650.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1829289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-16related to AP2 11