PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS594681.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 177aa MW: 19804.6 Da PI: 7.5062 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 64.1 | 1.5e-20 | 19 | 63 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k ienk +r+vtfskR g++ KA+EL +LC+aeva+i +s++g+ EcS594681.10 19 KIIENKNKREVTFSKRHRGMFRKASELAILCGAEVAIITYSPHGN 63 579***************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 8.4E-24 | 11 | 70 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 22.595 | 11 | 71 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.8E-25 | 12 | 81 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.1E-17 | 13 | 33 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.7E-22 | 21 | 67 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.1E-17 | 33 | 48 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.1E-17 | 48 | 69 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MAMAEAKKKS QGRRRVECKI IENKNKREVT FSKRHRGMFR KASELAILCG AEVAIITYSP 60 HGNPFVFGHP GVDAVINRYM PDGVVTEANE AAAAAAALRA VDKHKKQYQD AMSELEEVRM 120 AEVDAGKRRA AGNSEGQMWW NENVDDIMGV EELDFYADSL ERLMKMVADR VDNKPCA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010058863.1 | 1e-117 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A059C6A3 | 1e-116 | A0A059C6A3_EUCGR; Uncharacterized protein | ||||
STRING | XP_010058863.1 | 1e-117 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-26 | AGAMOUS-like 62 |