PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC073181.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

GRF

Protein Properties

Length: 223aa MW: 23960.9 Da PI: 10.3565

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC073181.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	79.1	4.2e-25	108	152	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e EcC073181.10 108 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 152 79****************************************986 PP
2	QLQ	59.3	1.1e-20	38	74	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy+ ++ P+P++Ll +i+k EcC073181.10 38 GPFTPSQWMELEHQALIYKYITSSIPIPSNLLIPIRK 74 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	2.1E-11	38	74	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	4.8E-15	39	73	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	22.429	39	74	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.663	108	152	IPR014977	WRC domain
Pfam	PF08879	1.8E-21	109	151	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008285	Biological Process	negative regulation of cell proliferation
GO:0048364	Biological Process	root development
GO:0048366	Biological Process	leaf development
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
ALSYVSLIFP SVCSFSGFNS AASLNGTSMQ GVLAGARGPF TPSQWMELEH QALIYKYITS 60 SIPIPSNLLI PIRKAFDSAG FSCYPGGLLR SNSLGWGSFH LGFSNTSDPE PGRCRRTDGK 120 KWRCSRDAVA DQKYCERHMN RGRHRSRKPV EGQTGHPVSG ATNTTSSTKQ LPAAPSASAP 180 TVVPSGGASN SLNIAHQQVK NLQHGVLNLN GDASMRRYSS LFS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010059815.1	1e-147	PREDICTED: growth-regulating factor 6
Swissprot	Q6AWY3	8e-64	GRF6_ORYSJ; Growth-regulating factor 6
TrEMBL	A0A059BJP2	1e-146	A0A059BJP2_EUCGR; Uncharacterized protein
STRING	XP_010059815.1	1e-147	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1454	28	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	7e-52	growth-regulating factor 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Liu H, et al. OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4. Plant Physiol., 2014. 165(1): p. 160-74 [PMID:24596329] Gao F, et al. Blocking miR396 increases rice yield by shaping inflorescence architecture. Nat Plants, 2015. 2: p. 15196 [PMID:27250748]