PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC060749.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | HSF | ||||||||
Protein Properties | Length: 219aa MW: 25261.9 Da PI: 10.6649 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 98 | 9e-31 | 2 | 80 | 15 | 102 |
GTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 15 lkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkks 102 +++++sw++ g sfvv+d+++fa+++Lp+yFkh+nf+SFvRQLn+YgF+k++ ++ weF+++ F +g+k+ll++ikr+k EcC060749.10 2 TDHVVSWNAGGGSFVVWDPHSFATHLLPRYFKHNNFSSFVRQLNTYGFRKTDPDR---------WEFANEGFLRGQKHLLKSIKRRKA 80 689************************************************9999.........*********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 8.5E-42 | 1 | 78 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 6.67E-29 | 2 | 78 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 6.1E-32 | 2 | 78 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.9E-27 | 3 | 78 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.6E-10 | 27 | 39 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.6E-10 | 40 | 52 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
GTDHVVSWNA GGGSFVVWDP HSFATHLLPR YFKHNNFSSF VRQLNTYGFR KTDPDRWEFA 60 NEGFLRGQKH LLKSIKRRKA PSGLIPQQQA VGPCVEVGYF GPDGEVDRLK RDKQVLMLEL 120 VKLRQQQQNT RAYLQAMEQR LQKTEVKQKQ MMAFLARAMQ NPAFLQQLLQ QKEKRKELEE 180 AVTKKRRRPI DQGPSSSQAV EPRQGLEGTN SVKAEPLEF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 5e-20 | 2 | 78 | 33 | 120 | Heat shock factor protein 1 |
5hdg_A | 5e-20 | 2 | 78 | 23 | 110 | Heat shock factor protein 1 |
5hdn_A | 5e-20 | 2 | 78 | 23 | 110 | Heat shock factor protein 1 |
5hdn_B | 5e-20 | 2 | 78 | 23 | 110 | Heat shock factor protein 1 |
5hdn_C | 5e-20 | 2 | 78 | 23 | 110 | Heat shock factor protein 1 |
5hdn_D | 5e-20 | 2 | 78 | 23 | 110 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 71 | 77 | LKSIKRR |
2 | 173 | 187 | KRKELEEAVTKKRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018721425.1 | 1e-159 | PREDICTED: heat stress transcription factor A-2b | ||||
Swissprot | Q6VBB2 | 1e-102 | HFA2B_ORYSJ; Heat stress transcription factor A-2b | ||||
TrEMBL | A0A059A864 | 1e-158 | A0A059A864_EUCGR; Uncharacterized protein | ||||
STRING | XP_010038059.1 | 1e-159 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1256 | 28 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 8e-86 | heat shock transcription factor A6B |
Publications ? help Back to Top | |||
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