PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC054893.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | G2-like | ||||||||
Protein Properties | Length: 386aa MW: 42597.2 Da PI: 5.7951 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 99.8 | 1.8e-31 | 228 | 283 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W++eLH+ F++a++qLGG+++AtPk+i+e+mkv+gLt+++vkSHLQkYRl+ EcC054893.20 228 KQRRCWSTELHRGFLHALQQLGGPDVATPKQIREVMKVDGLTNDEVKSHLQKYRLH 283 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-27 | 225 | 286 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.398 | 225 | 285 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.18E-17 | 226 | 285 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-26 | 228 | 283 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.6E-5 | 230 | 281 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MESWKRGKKK KMEYPERTRS YVEALEEERR KIQVFERELP LCLELVIQAI ERCKQQLSVQ 60 GQSSECNSEQ TSMDGGRVLE EFIPLKGPYS GDDDEDDACE EEDDGDGDGD GDVHHSSRDD 120 KSGDDNAMEK SDWLRSAQLW NPNPDPIPHR EVQDPPPPPP PSKEVAAVAN QLKSHESGAF 180 RPFRIGENNS TKKKQPPGRA APPAPDAAAC STAETASGRT SRQAAQRKQR RCWSTELHRG 240 FLHALQQLGG PDVATPKQIR EVMKVDGLTN DEVKSHLQKY RLHARRPSPN GHNNANAEAP 300 QFLVVGGIWM QPPGFPAVAT GKLPLEAASN RVYAPVTMLP QPLGPSHKEC GFVTSEERGS 360 QSEVGVDHFN NSSSTTSSST HMTVDL |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00160 | DAP | Transfer from AT1G25550 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010044289.1 | 0.0 | PREDICTED: myb family transcription factor EFM | ||||
TrEMBL | A0A059D6Z4 | 1e-134 | A0A059D6Z4_EUCGR; Uncharacterized protein | ||||
STRING | XP_010044289.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3491 | 28 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25550.1 | 8e-73 | G2-like family protein |