PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054677.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family Trihelix
Protein Properties Length: 468aa    MW: 53373.8 Da    PI: 6.6828
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054677.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix971.7e-30117202187
      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                   rW++qe+l+L+e+r++++ +++++++k+plWeevs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  EcC054677.20 117 RWPRQETLTLLEIRSRLDPKFKETNQKGPLWEEVSRIMsEEHGYNRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKNYRFFRQLEA 202
                   8*************************************999*****************************97..66678*******85 PP
2trihelix35.72.2e-11415468456
      trihelix   4 kqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwen 56 
                   + e+l+Li++ +++e  +++ g  +++ We +s+km+  g++rs+ +C+ekwen
  EcC054677.20 415 EPEILTLIQLITSLEPGFQEcGLVREGFWELISAKMACLGYNRSAGECQEKWEN 468
                   679****************977899****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.248110175IPR017877Myb-like domain
SMARTSM007170.0076114177IPR001005SANT/Myb domain
PfamPF138375.7E-21116203No hitNo description
CDDcd122034.35E-21116182No hitNo description
PROSITE profilePS500907.097405468IPR017877Myb-like domain
SMARTSM007179409468IPR001005SANT/Myb domain
PfamPF138373.5E-8412468No hitNo description
CDDcd122031.74E-14414468No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010200Biological Processresponse to chitin
GO:0046621Biological Processnegative regulation of organ growth
GO:0048442Biological Processsepal development
GO:0048498Biological Processestablishment of petal orientation
GO:0090428Biological Processperianth development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MDEQYGLPDL RQLIATRTTQ FSSLLHLEPP LPPAPPPRTT IHTSFSPSSP PSSSHYEPTV  60
NMLSTALANT NAHSAHPFAT ATPPPSALTG AFDIFECGSY RSDMIGAAGT SGISSSRWPR  120
QETLTLLEIR SRLDPKFKET NQKGPLWEEV SRIMSEEHGY NRSGKKCREK FENLYKYYKK  180
TKEGKAGRQD GKNYRFFRQL EAIYGESTTA NRKPSSDNSS LVSNINFYPA PNNISSHAFQ  240
DQALQREMSL SFSNSSSHEL ETASSSENNE EDLSAIAFMM NSSHSSEKKK RLVSESDSSK  300
RSKKGWKEKV KHFVDSQMRD IIEKQEAWME NMLKTIELKE QERVCREMEW KREETARFDC  360
ERELWAKQRV WIEARDTALM EALRKFTGQE LAILSPPKDR NIAKEEERNT SSFSEPEILT  420
LIQLITSLEP GFQECGLVRE GFWELISAKM ACLGYNRSAG ECQEKWEN
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010032102.10.0PREDICTED: trihelix transcription factor PTL
SwissprotQ9LZS08e-96PTL_ARATH; Trihelix transcription factor PTL
TrEMBLA0A059ADP80.0A0A059ADP8_EUCGR; Uncharacterized protein
STRINGXP_010032102.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27672871
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.12e-93Trihelix family protein
Publications ? help Back to Top
  1. Quon T,Lampugnani ER,Smyth DR
    PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 152
    [PMID:28228771]