PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC050517.40

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bHLH

Protein Properties

Length: 489aa MW: 54287.1 Da PI: 7.7743

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC050517.40	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.9	8.4e-09	306	348	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 Er+RR ri++++ +Lr+l+P+ + K++ +iL A eYI +L EcC050517.40 306 VTERKRRTRIKEGLYTLRSLVPNiS------KMDMTSILGDAAEYIVNL 348 46*******************66......*************777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.49E-14	298	363	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.98E-10	298	351	No hit	No description
PROSITE profile	PS50888	13.668	299	348	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.7E-8	305	354	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.6E-6	306	348	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-13	306	368	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence Send to blast
MRALQRSLAW LRPLVDSAAW DYAVVWKLGS LSGSGAAAEE EEERRRRIEA RRRQGGGARR 60 APPAALQGPP RSAPREDQSV PGPRPLPFFS PSLFWVSVAL PFSRSKGCEE MMPDCVFFGQ 120 DPRRGGDIEP AQEFTGTSVL ISVVGGIVEL FSAKHMPEEP LEKEMMMTWS LFLREAVNAG 180 ICDLSIDELL IQEYFKLYPS PLHLSGLDPG LPQLPTGTES SNYPEGSSSS SDLTTNEYPS 240 FDLHNILGYL SQAGLMKQSV VESMESKDSK SLSKQTNLSG CHVGSAKRKG VDKQQEGGKC 300 QAKNLVTERK RRTRIKEGLY TLRSLVPNIS KMDMTSILGD AAEYIVNLET EMRKLKEELE 360 KSEKELCRLK DTDSKSLARS VGHGCSKSLA EKLDTWEISR LTSKTNSKAQ VEVNQIGNGD 420 FLVKILMSQK HGWFTGMMDG INSLGYTVVD ANVTTLNGKV LANLMLEVRY ANILMRILWQ 480 LRVITEFLS

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence Send to blast

MRALQRSLAW LRPLVDSAAW DYAVVWKLGS LSGSGAAAEE EEERRRRIEA RRRQGGGARR  60
APPAALQGPP RSAPREDQSV PGPRPLPFFS PSLFWVSVAL PFSRSKGCEE MMPDCVFFGQ  120
DPRRGGDIEP AQEFTGTSVL ISVVGGIVEL FSAKHMPEEP LEKEMMMTWS LFLREAVNAG  180
ICDLSIDELL IQEYFKLYPS PLHLSGLDPG LPQLPTGTES SNYPEGSSSS SDLTTNEYPS  240
FDLHNILGYL SQAGLMKQSV VESMESKDSK SLSKQTNLSG CHVGSAKRKG VDKQQEGGKC  300
QAKNLVTERK RRTRIKEGLY TLRSLVPNIS KMDMTSILGD AAEYIVNLET EMRKLKEELE  360
KSEKELCRLK DTDSKSLARS VGHGCSKSLA EKLDTWEISR LTSKTNSKAQ VEVNQIGNGD  420
FLVKILMSQK HGWFTGMMDG INSLGYTVVD ANVTTLNGKV LANLMLEVRY ANILMRILWQ  480
LRVITEFLS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010026676.1	0.0	PREDICTED: transcription factor bHLH90
STRING	XP_010026676.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6985	27	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	2e-17	bHLH family protein