PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EcC045643.60 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 491aa MW: 53688.5 Da PI: 9.7274 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.2 | 1.4e-05 | 56 | 78 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H EcC045643.60 56 FVCEICNKGFQRDQNLQLHRRGH 78 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.8 | 0.00036 | 132 | 154 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ EcC045643.60 132 WKCEKCSKKYAVQSDWKAHSKTC 154 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.41E-7 | 55 | 78 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.6E-5 | 55 | 78 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12171 | 7.8E-5 | 56 | 78 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.949 | 56 | 78 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.017 | 56 | 78 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 58 | 78 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 100 | 97 | 127 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.2E-4 | 120 | 153 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.41E-7 | 127 | 152 | No hit | No description |
SMART | SM00355 | 140 | 132 | 152 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010075 | Biological Process | regulation of meristem growth | ||||
GO:0042545 | Biological Process | cell wall modification | ||||
GO:0045604 | Biological Process | regulation of epidermal cell differentiation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0051302 | Biological Process | regulation of cell division | ||||
GO:0005618 | Cellular Component | cell wall | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0030599 | Molecular Function | pectinesterase activity | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 491 aa Download sequence Send to blast |
MKLTTQTLTL IKLPPTLEPR RREICREHQM CDTDTTDPDA EVIALSPKTL MATNRFVCEI 60 CNKGFQRDQN LQLHRRGHNL PWKLRQRSKE VVKKKVYICP EKTCVHHDPS RALGDLTGIK 120 KHFSRKHGEK KWKCEKCSKK YAVQSDWKAH SKTCGTREYK CDCGTLFSRK DSFITHRAFC 180 DALAEESARF SSVSSTNLNF ANNAMNETTI GAHSNLPPHG FSNNRGVQDI TGVSLTTLQQ 240 KSRMSQWINP ANPALNPSDI LSSNPNLTCL SEMVQMGNAS GNNLFGSSPM SNFGSNKQFS 300 AFEKTNLTLS AFRQGLKDQA GSNKGNLFEA PPSLYSDSQT KPSAALMSAT ALLQKAAQMG 360 SSRSNPGSLF KESFGVMSSS SSSNTTAFSV LGQSQNDLPS QFINQSMMSK QQESFGAPVG 420 GMNNLSDSVP NLSPSMTRPT TTTTNSLELN ATRDFLGMSG GAGGPPFSPQ EFAKFASMSS 480 AMGFSQFVGN N |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-39 | 128 | 197 | 3 | 72 | Zinc finger protein JACKDAW |
5b3h_F | 2e-39 | 128 | 197 | 3 | 72 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that, together with BIB, regulates tissue boundaries and asymmetric cell division by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action (PubMed:17785527, PubMed:25829440). Binds DNA via its zinc fingers (PubMed:28211915, PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Confines CYCD6 expression to the cortex-endodermis initial/daughter (CEI/CEID) tissues (PubMed:25829440). Required for radial patterning and stem cell maintenance (PubMed:17785527). Counteracted by 'MAGPIE' (MGP) (PubMed:17785527). Binds to the SCR and MGP promoter sequences (PubMed:21935722). Controls position-dependent signals that regulate epidermal-cell-type patterning (PubMed:20356954). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:20356954, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:28211915}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00485 | DAP | Transfer from AT5G03150 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Not regulated by SCR and SHR. {ECO:0000269|PubMed:21935722}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010046700.1 | 0.0 | PREDICTED: zinc finger protein JACKDAW | ||||
Swissprot | Q700D2 | 1e-121 | IDD10_ARATH; Zinc finger protein JACKDAW | ||||
TrEMBL | A0A059DEI7 | 0.0 | A0A059DEI7_EUCGR; Uncharacterized protein | ||||
STRING | XP_010046700.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM155 | 28 | 306 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G03150.1 | 1e-109 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
---|---|---|---|
|