PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC037230.60
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 370aa    MW: 40711.1 Da    PI: 7.2593
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC037230.60genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.70.000232422801255
                   HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   R +++ ++++ L +l+ +      +K + a++L +A+ YI+ Lq
  EcC037230.60 242 RKEKLGDRISALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 280
                   67788899999****9998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.947230279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-10240290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.96E-6240284No hitNo description
Gene3DG3DSA:4.10.280.108.1E-8244287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009116Biological Processnucleoside metabolic process
GO:0003824Molecular Functioncatalytic activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
QGFYLQSSSP VQHMMSGNPN YWWNNINPPP PRSPFCHSSS SSPNLFLPYP PSSSLSSLFH  60
LNPSWVYNNN VNQEQLPESL SQLLMGGLVG EEDKSSVMMN YLQEKRVEDW EEQQVLQQSP  120
NDASVLDNQH HHLHVKQEDS ASSYGVYGGA ASDHHALQGT TNKSAWSQHH HHAMIPNSPP  180
KSCVTTSFSS SMLDFSNKKP VNKRQTPPDL SSECNSNATG GVQKKAKVQP PSTSQSNTFK  240
VRKEKLGDRI SALHQLVSPF GKTDTASVLL EAIGYIRFLQ NQIEALSSPY IGSASGKTRH  300
HQSYVIVCKV RGERSPMFSE DSGQESINEE PKNDLRSRGL CLVPVSCTLQ VGSDNGADYW  360
ASAFGGGGLR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047918.10.0PREDICTED: transcription factor bHLH68
SwissprotQ8S3D11e-67BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A059CNM80.0A0A059CNM8_EUCGR; Uncharacterized protein
STRINGXP_010047918.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18722851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.13e-69bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]