PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC037164.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 296aa    MW: 33141.8 Da    PI: 5.0862
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC037164.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.32.8e-08171214755
                   HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    + r+RR++i ++  eL +l+P       +K++ ae+L+ A +Y+k+Lq
  EcC037164.10 171 LAARQRRRKITEKTLELGKLVPGG-----RKMNTAEMLQAAYKYVKYLQ 214
                   567*******************96.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.186164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.16E-9167217No hitNo description
SuperFamilySSF474591.05E-11167222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-11168222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-11170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-6171214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MAMSFCSNLS SLQHHRLNRV AGLPPLLNPS ELHGLWGDNC SAFSDSCVDP LLDYCSADYL  60
YPDYLVPYFS SSPDNLISIS PDIFPIDELE YCPYPKRQKQ EPLEFPDLSA GFLDGYVADE  120
LPPVELSPPQ LMLPPQPEPH FQQERCGSCG GRENGTKKPS VGGETLSTQS LAARQRRRKI  180
TEKTLELGKL VPGGRKMNTA EMLQAAYKYV KYLQAQVGIL ELSQSIQVKN EETRHSKREL  240
QVLLESPKIQ EKLYAEEKCL ATKELVQAFA KDPEVQSTDT IGKEIVQLLC AHGWNI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19299PYPKRQKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053034.10.0PREDICTED: transcription factor bHLH53 isoform X1
TrEMBLA0A059CFM41e-111A0A059CFM4_EUCGR; Uncharacterized protein
STRINGXP_010053034.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45472552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.12e-31bHLH family protein