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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | EcC036168.10 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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| Family | bHLH | ||||||||
| Protein Properties | Length: 287aa MW: 32134.9 Da PI: 8.9614 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 34.1 | 4.8e-11 | 111 | 154 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+Er+RR++i + f L ++P++ kK++Ka+iLe A++Y k+Lq
EcC036168.10 111 LAERKRREKISKLFIALSAVIPNL-----KKMDKASILEDAIRYSKELQ 154
68**********************.....9**************99998 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50888 | 14.818 | 104 | 153 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 2.62E-15 | 110 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 5.6E-13 | 110 | 159 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 7.6E-9 | 111 | 154 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 9.6E-16 | 111 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 1.61E-11 | 111 | 158 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 287 aa Download sequence Send to blast |
SPETMPGFVP QFVETPQEFT QRPWKQLETE SWISPHTTEH KTMARNVVIS PSRSPSRPPE 60 SHFMSFGNPN SSPAISYPFY GTCEIQDREE PKMKSAGATS RKPVPTQENV LAERKRREKI 120 SKLFIALSAV IPNLKKMDKA SILEDAIRYS KELQQRVEAL EEEVAAKTVE SVVVAKKPRL 180 NMYDDTSSSS NEKSCGHLNR QLSLPDIEAR ISGKCILIKI HCEKRKGLIS KIIGQTEKLN 240 LIVVSSCVLP FGSSTQDVTI LAQVDEGFSL KMGDLVRNLR QALLDLV |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 112 | 117 | ERKRRE |
| 2 | 113 | 118 | RKRREK |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010023398.1 | 0.0 | PREDICTED: transcription factor bHLH18 | ||||
| TrEMBL | A0A059B075 | 0.0 | A0A059B075_EUCGR; Uncharacterized protein | ||||
| STRING | XP_010023398.1 | 0.0 | (Eucalyptus grandis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM492 | 27 | 146 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G37850.1 | 3e-49 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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