PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC035819.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | B3 | ||||||||
Protein Properties | Length: 115aa MW: 13206.1 Da PI: 9.7149 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 42.4 | 1.2e-13 | 2 | 109 | 2 | 97 |
EEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTH.HHHHHHHT--TT-EEEEEE- CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesg.rsWevkliyrkksgryvltkGW.keFvkangLkegDfvvFkld 85 +k lt+sd + ++rl + ++f+++h + ++ ++++++++d++ + ++ + ++ +sg+yvl++GW keFvk gL +gD v ++ EcC035819.10 2 KKRLTQSDLGHLSRLLIGRDFVKSHflrwmneetvrQVESGKGTDVIVRDLDTcSEHRLVFVFWASSGSYVLKGGWiKEFVKRRGLAAGDEVGIYW- 97 5889*************************9888887555568999*****9987777788888*************999************99995. PP SS.SEE..EEEEE CS B3 86 gr.sefelvvkvf 97 + s e++++++ EcC035819.10 98 -EpSASEFHFSLL 109 .445555577665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 0.0034 | 1 | 112 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.33E-17 | 1 | 109 | No hit | No description |
SuperFamily | SSF101936 | 3.73E-16 | 2 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.2E-17 | 2 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.3E-10 | 3 | 108 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 115 aa Download sequence Send to blast |
IKKRLTQSDL GHLSRLLIGR DFVKSHFLRW MNEETVRQVE SGKGTDVIVR DLDTCSEHRL 60 VFVFWASSGS YVLKGGWIKE FVKRRGLAAG DEVGIYWEPS ASEFHFSLLH RANQA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010042934.1 | 1e-77 | PREDICTED: putative B3 domain-containing protein At1g78640 | ||||
Refseq | XP_018729963.1 | 2e-78 | PREDICTED: B3 domain-containing protein At2g33720-like | ||||
TrEMBL | A0A059C5U6 | 3e-77 | A0A059C5U6_EUCGR; Uncharacterized protein | ||||
STRING | XP_010042934.1 | 5e-77 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM456 | 9 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33720.1 | 9e-25 | B3 family protein |