PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC031613.30 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | bHLH | ||||||||
Protein Properties | Length: 490aa MW: 54806.6 Da PI: 4.7226 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.7 | 5.6e-05 | 325 | 359 | 15 | 54 |
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++N++f Lr+llP+ +K +Ka+ L + +Y+ sL EcC031613.30 325 KLNESFLALRSLLPPG-----TKKDKASLLATTRDYLGSL 359 89************97.....79*************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 8.892 | 310 | 359 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-7 | 325 | 376 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-9 | 325 | 382 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.80E-6 | 325 | 364 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003697 | Molecular Function | single-stranded DNA binding | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0008094 | Molecular Function | DNA-dependent ATPase activity | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 490 aa Download sequence Send to blast |
MDSAFLLDGD ARSNVLHLIA QSFGCRYICL WSYLTPTSCL CYLDGLFQEA AAASGGNNDN 60 VQARRLFDEY RQSLFILHPN SSHTQVPGLA FRNSNPYIEL REEDLSRLAS NSCQREFYQI 120 AVFMGCSSGE IELGFSNIPQ VDIQTQMMNL FPEDFSRQMA MRELARATEP NTTPMTNPPS 180 SSSSSLRSLS MDSPEYSSLL FSIPTTTSSF INPELALRDP SIAENITTQS MPIMTTTDTP 240 GTSTTGASSH PXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 300 XXXXXXXXXX XXXXXXXXXX XXXXKLNESF LALRSLLPPG TKKDKASLLA TTRDYLGSLK 360 EQVEDLRRKN TVLQAQLLPP KEPMSGGSPG DSSRVEVQTR TVSESTSQDR TVDLQVTVRG 420 DCPAMSLVIR ILEFLRQVRN VSLMSMDADT QVHESNIVNR VNLRLNVEGG EWDEPGFQEA 480 VRRVVADLAQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010051453.1 | 1e-170 | PREDICTED: putative transcription factor bHLH041 isoform X1 | ||||
Refseq | XP_018726993.1 | 1e-170 | PREDICTED: putative transcription factor bHLH041 isoform X2 | ||||
TrEMBL | A0A059CUF4 | 1e-168 | A0A059CUF4_EUCGR; Uncharacterized protein | ||||
STRING | XP_010051453.1 | 1e-169 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7060 | 28 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56960.1 | 6e-38 | bHLH family protein |