PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC030345.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 183aa MW: 21021.8 Da PI: 8.2325 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 55.2 | 9.1e-18 | 15 | 63 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 krien+ +r +tfskRr gi K A+EL +LC aev v+++s++g+ + + EcC030345.10 15 KRIENEERRLITFSKRRSGICKIASELVTLCRAEVGVLVLSPSGNPFSF 63 79*****************************************986666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 21.516 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.4E-20 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-15 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.54E-22 | 10 | 82 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-19 | 16 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-15 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-15 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MAGKQTREHQ RIEMKRIENE ERRLITFSKR RSGICKIASE LVTLCRAEVG VLVLSPSGNP 60 FSFAHPSIDT VANQFLNRNP PSIDGSYALV ESNRQARINE LNQQYDELIN QIKVEEARNK 120 VLKQLTEGKG NGAWWEAPIE ELNLEELHQM EVRMEDLRRS LWMSINQRTQ GKASKSIQGQ 180 SFD |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010059071.1 | 1e-125 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A059C798 | 1e-125 | A0A059C798_EUCGR; Uncharacterized protein | ||||
STRING | XP_010059071.1 | 1e-124 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 3e-37 | AGAMOUS-like 62 |