PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC023480.80
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ARR-B
Protein Properties Length: 574aa    MW: 62836.6 Da    PI: 6.8386
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC023480.80genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like924.9e-29202255155
       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                   kpr++W+ +LH++Fv+av+qL G ekA+Pk+il+lm+v+gLt+e+v+SHLQkYRl
  EcC023480.80 202 KPRVVWSVDLHRKFVSAVNQL-GLEKAVPKKILDLMNVEGLTRENVASHLQKYRL 255
                   79*******************.********************************8 PP
2Response_reg79.51.1e-26171251109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl vdD+p+ +++l+++l++ +y +v+++ ++  al++l+e++  +Dl++ D++mp+mdG++ll+     e++lp+i+++a+g+++++ + +  Ga 
  EcC023480.80  17 VLAVDDDPTCLKVLENLLRSCQY-QVTTTNQAIMALKMLRENRdkFDLVISDVNMPDMDGFKLLELVGL-EMDLPVIMLSAYGDPKLVMKGITHGAC 111
                   799********************.***************999889*******************87754.558************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ +eel +
  EcC023480.80 112 DYLLKPVRMEELKN 125
                   ***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23003.4E-4414156No hitNo description
SuperFamilySSF521724.55E-3714144IPR011006CheY-like superfamily
SMARTSM004483.9E-3415127IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011044.77416131IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.5E-2417125IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.89E-2918131No hitNo description
Gene3DG3DSA:1.10.10.602.0E-30199260IPR009057Homeodomain-like
PROSITE profilePS5129410.838199258IPR017930Myb domain
SuperFamilySSF466893.76E-19200259IPR009057Homeodomain-like
TIGRFAMsTIGR015577.4E-25202255IPR006447Myb domain, plants
PfamPF002493.5E-7204254IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006810Biological Processtransport
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0005215Molecular Functiontransporter activity
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MTVEDGGNDR FPVGMRVLAV DDDPTCLKVL ENLLRSCQYQ VTTTNQAIMA LKMLRENRDK  60
FDLVISDVNM PDMDGFKLLE LVGLEMDLPV IMLSAYGDPK LVMKGITHGA CDYLLKPVRM  120
EELKNIWQHV IRRKTSNSKN QSQLPNQDKD NGESGQGAQG AQTTANPDGK LNKRRKDQNE  180
EEEEEDGEDN ENENEDPSSQ KKPRVVWSVD LHRKFVSAVN QLGLEKAVPK KILDLMNVEG  240
LTRENVASHL QKYRLYLKRI SNVQQANMVA AFGAKDPSYM RMTALNGFGD FRTLAGSGRF  300
SGTSLYPQGI MLGRLNSPVG LGLQGIAASG PIQPSHLQNV SKSINSLGKL QPNPPPANQN  360
TSLLQPNHGK PGPHIRDITK FDNPTALKVS PIADNRVTAS SSSNLSQSVP SSHLLLQGNP  420
QQSRSGDEFG IQSSFGAVSL QSETLNVGAI GGCNFIDKSR CNENWHGAVQ LPQLPSANPT  480
PLTVPFNCSQ VAPTNMTEKF TLPSPFIHNG PNNISSSPVP SALGDSRGDM QCQAGLLGNV  540
IQNVDFTSSK SKWEDHNQNY QHQFNHGFGT FDSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-25198261164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047141.10.0PREDICTED: two-component response regulator ORR24
SwissprotA2X1N21e-141ORR24_ORYSI; Two-component response regulator ORR24
TrEMBLA0A059CLC50.0A0A059CLC5_EUCGR; Uncharacterized protein
STRINGXP_010047141.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19812879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-123response regulator 12