PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC015427.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 87aa MW: 9606.14 Da PI: 10.9931 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 49.9 | 3.9e-16 | 13 | 49 | 5 | 41 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 n + r + + kR++g++KKA E SvLC+++ +v++f EcC015427.10 13 NARARRIAYEKRKKGLMKKAREFSVLCGVDTCVVVFP 49 78899******************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 1.01E-17 | 1 | 82 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 16.862 | 1 | 48 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.4E-11 | 1 | 67 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 4.91E-17 | 2 | 82 | No hit | No description |
PRINTS | PR00404 | 6.2E-7 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.0E-16 | 13 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.2E-7 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 87 aa Download sequence Send to blast |
MGRGKTPHGL VPNARARRIA YEKRKKGLMK KAREFSVLCG VDTCVVVFPE AAAAGGDRPT 60 APEVWPPDSG EARRIIERYR SAGRKEK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 14 | 25 | RARRIAYEKRKK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010023474.1 | 4e-56 | PREDICTED: MADS-box transcription factor 4 | ||||
TrEMBL | A0A059B0V5 | 9e-55 | A0A059B0V5_EUCGR; Uncharacterized protein | ||||
STRING | XP_010023474.1 | 1e-55 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5948 | 19 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 3e-19 | M-type_MADS family protein |