PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC013799.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 261aa    MW: 29347.6 Da    PI: 9.4861
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC013799.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH382.9e-12109154555
                   HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   h ++Er+RR+++ ++f  L +++P +     +Kl+Ka++L  +++Y+k+L+
  EcC013799.10 109 HVIAERKRREKLSQRFIALSSIIPGL-----TKLDKASVLGDTIKYLKQLE 154
                   889**********************9.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.066104153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-15108165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-15109170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.72E-12109153No hitNo description
PfamPF000106.2E-10109154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-13110159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MNPFGYSLTK FGFNQFTSFS SASTYTSNQI QNVGHSRDVP IATKHKNPQM KPSPPSNSQI  60
ISFQNSDLYP NMSQQYPGTY ELQDGENRKM KRRGVGGTFS RTTLHGPEHV IAERKRREKL  120
SQRFIALSSI IPGLTKLDKA SVLGDTIKYL KQLEEREKIL EEEVAMRTVE SAIFAKKPSL  180
QRGDGVICFP SDEKSYDSPI DQQLPEVKAR VLGKNVLIKV QCEKHEGCIK EVMKQMEDMN  240
LTTLNIGVLT FGSSLLDITI V
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112117ERKRRE
2113118RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010023400.11e-166PREDICTED: transcription factor bHLH18-like
TrEMBLA0A059B1U81e-166A0A059B1U8_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010023400.11e-165(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-36bHLH family protein