PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EcC004408.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 253aa MW: 28366.5 Da PI: 8.6331 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.8 | 4.6e-14 | 73 | 125 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ +hn+ Er RR+++N +++Lr+llP a + kKls +++ +A +YI ++q EcC004408.10 73 KKLSHNASERDRRKKMNGLYSTLRSLLPAA--DRMKKLSIPTMVSRALKYIPEMQ 125 6789*************************6..49999**************9988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.221 | 72 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.01E-15 | 73 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.1E-11 | 73 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.39E-14 | 73 | 129 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.3E-14 | 73 | 143 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.9E-10 | 78 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 253 aa Download sequence Send to blast |
MLSFSPSGWP LEDSTSHEQW SHMHRDAYTC YSPPLLRFPF SSPPTLSPPA DLALDPLDVP 60 FGGAKGEEAT MVKKLSHNAS ERDRRKKMNG LYSTLRSLLP AADRMKKLSI PTMVSRALKY 120 IPEMQQQVEK LTQEKEKLLS RINASRDGDY YTSHQEISRG KGSLQILVPS ISTTRLSESE 180 VAIQISTRKA MTHKTVDFFE VLLALDYLGF PVISSSTFES CGGMKTTFYN LHVQVVGEIL 240 VKSFEVDKTF PSV |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010036348.1 | 1e-157 | PREDICTED: transcription factor ORG2 | ||||
TrEMBL | A0A059D2E5 | 1e-105 | A0A059D2E5_EUCGR; Uncharacterized protein | ||||
STRING | XP_010036348.1 | 1e-156 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM482 | 28 | 153 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G56970.1 | 1e-40 | bHLH family protein |