PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC004055.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 167aa MW: 19106.3 Da PI: 8.8606 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 32.4 | 1.2e-10 | 2 | 34 | 1 | 33 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCda 33 krien+ r vtfsk + i KA+EL +LC+ EcC004055.10 2 KRIENEGSRPVTFSKHKSSIYRKASELVTLCGP 34 79*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 0.0023 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 13.526 | 1 | 35 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.06E-12 | 1 | 71 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-10 | 3 | 34 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MKRIENEGSR PVTFSKHKSS IYRKASELVT LCGPKECSLS AGNPFCFAHP SIDTVANQFL 60 NQNPLSHDRS HAFIESYNQV QIDEHNQQYD ELVNQIKSEK TQGKVLKRLT EGKSHGAWWE 120 APIEELNLKE LNQRMAQMED LRQSLRRSTN QRNRGEASTS FQGRSSS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010059071.1 | 8e-71 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A059C7K6 | 1e-99 | A0A059C7K6_EUCGR; Uncharacterized protein | ||||
STRING | XP_010059071.1 | 3e-70 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 3e-25 | AGAMOUS-like 62 |