PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC002598.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 484aa    MW: 54301 Da    PI: 5.9467
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC002598.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.11.4e-5291361128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                   lp GfrF+Ptd+el+++yL+ k++g++ e+ +vi+evd++kvePwdLp  +++++++ ew+fF++rd+ky++g+r nrat++gyWkatgkd++++  
  EcC002598.10   9 LPLGFRFRPTDQELIDHYLRLKINGRDREV-RVIREVDVCKVEPWDLPdlSAIESRDPEWFFFCPRDRKYPNGHRLNRATTAGYWKATGKDRKIKL- 103
                   699************************999.99**************96448888889**************************************. PP

           NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   +++l+g+kktLvfy+grapkg++t Wvmheyr 
  EcC002598.10 104 GRNLIGMKKTLVFYTGRAPKGKRTYWVMHEYRT 136
                   999****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-603159IPR003441NAC domain
PROSITE profilePS5100556.3269159IPR003441NAC domain
PfamPF023655.3E-2710135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MAVLPLNSLP LGFRFRPTDQ ELIDHYLRLK INGRDREVRV IREVDVCKVE PWDLPDLSAI  60
ESRDPEWFFF CPRDRKYPNG HRLNRATTAG YWKATGKDRK IKLGRNLIGM KKTLVFYTGR  120
APKGKRTYWV MHEYRTTLEE LDGTHPGQGA FVLCRLFRKQ DETLECPTRD DAEVVVVSPT  180
ANSLPDDTES ELVIAQDGPS VIAQDGPSSA TQDKLPHEDC DLEQRQCVLP KNESGCQLEW  240
NGAKDYEIDT LQMGMARGNF QMGFPDSNFH QDSSAAASLF GISDASQSDV RPNSIHLQDL  300
GTSSTDLQSG DTFGTGIRIR SRSSQILQPQ FDHGAQGSAP RRLRIQCKLQ IGPLSCSRKP  360
NDFISCDEVK KFKSINAEEE KVFDKLVEGG EDSVGDESVS SSSSEPQKLT LCDINEESEV  420
SREIVSTQDA RSNKQYSRSR LLVSSLFTEG PAIRSGRSRI NLFSFLVFLV FSLGAISAWR  480
YISL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-44816214171Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010045303.11e-169PREDICTED: protein NTM1-like 9
TrEMBLA0A059DDE21e-168A0A059DDE2_EUCGR; Uncharacterized protein
STRINGXP_010045303.11e-168(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24162873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.11e-83NAC transcription factor-like 9