PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS74085.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family ARF
Protein Properties Length: 604aa    MW: 67076.9 Da    PI: 6.8485
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS74085.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.18.3e-24108209199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f k+lt+sd+++ g +++p+ +ae++         ++ +s  +  +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF+  + + + l
  EPS74085.1 108 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQS--ILARDVHGQVWKFRHIYRGTPRRHLLTTGWSTFVNSKNLVAGDSIVFM--RGEAGDL 202
                 89*****************************987777776..9999********************************************..4489999 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +++++r+
  EPS74085.1 203 CIGIRRA 209
                 ****996 PP
2Auxin_resp108.85.7e-36263345182
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82 
                 a++ a+++++FevvY+Prast+eF+v+++ v++a++v++ +GmRfkmafetedss++++ +Gt+++v+ +dp rWp+S+Wr+L
  EPS74085.1 263 AVTLAANRQAFEVVYYPRASTPEFCVNASLVRAAMTVRWVAGMRFKMAFETEDSSRISWfMGTITAVQVADPNRWPDSPWRLL 345
                 67899****************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-2996212IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.5E-3698210IPR015300DNA-binding pseudobarrel domain
CDDcd100171.13E-20108208No hitNo description
SMARTSM010195.5E-20108210IPR003340B3 DNA binding domain
PfamPF023628.7E-22108209IPR003340B3 DNA binding domain
PROSITE profilePS5086313.014108210IPR003340B3 DNA binding domain
PfamPF065072.1E-31263345IPR010525Auxin response factor
PROSITE profilePS5174512.749528603IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
LDPQLWQACA GNMVQIPVIN SSVFYFPQGH SEHASENVDF SKCPRVSSYI PCRVSAVKFL  60
ADHDTDEVFA KIRLIPVDRS EFSFDDGESV SVMGSENQDK SSSSSSSFAK TLTQSDANNG  120
GGFSVPRYCA ETIFPRLDYT ADPPVQSILA RDVHGQVWKF RHIYRGTPRR HLLTTGWSTF  180
VNSKNLVAGD SIVFMRGEAG DLCIGIRRAK KVFEARSGWN ASSNNSGGIM GGVFSSLIRD  240
DETAANNGSS RRRKVKAEDV VQAVTLAANR QAFEVVYYPR ASTPEFCVNA SLVRAAMTVR  300
WVAGMRFKMA FETEDSSRIS WFMGTITAVQ VADPNRWPDS PWRLLVVNWD EPELLQNVKR  360
VSPWLVELAT TNVHGFPISS FSPPRKKVRL SSADSQDFSF HHHFVVPPPA HHRHHHHHQH  420
HEMLSLSGNN ATTIAPSGIQ GARHGYSTTP VFKQYPSGAA VSQRGDESVS CLLRVGNHPD  480
HPAAKPFLLF GQTILTDEQM MRSNDDDEDE KRGFDLNHRD RECEQQQRCE VLVESEDLVG  540
RSLDLGSVGS YGELREKVEA AFGEANDGSS IVYSDENGAV RQLGDEPFIA FKRSARRLTI  600
LSGT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-79136751388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094651.10.0auxin response factor 18
RefseqXP_011094652.10.0auxin response factor 18
SwissprotQ93YR90.0ARFP_ARATH; Auxin response factor 16
TrEMBLS8D3T90.0S8D3T9_9LAMI; Auxin response factor (Fragment)
STRINGSolyc09g007810.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Yang ZB, et al.
    TAA1-regulated local auxin biosynthesis in the root-apex transition zone mediates the aluminum-induced inhibition of root growth in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2889-904
    [PMID:25052716]
  3. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  4. Zhang GZ, et al.
    Ectopic expression of UGT75D1, a glycosyltransferase preferring indole-3-butyric acid, modulates cotyledon development and stress tolerance in seed germination of Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 90(1-2): p. 77-93
    [PMID:26496910]
  5. Ye Y, et al.
    Germostatin resistance locus 1 encodes a PHD finger protein involved in auxin-mediated seed dormancy and germination.
    Plant J., 2016. 85(1): p. 3-15
    [PMID:26611158]
  6. Liu Z, et al.
    Repression of callus initiation by the miRNA-directed interaction of auxin-cytokinin in Arabidopsis thaliana.
    Plant J., 2016. 87(4): p. 391-402
    [PMID:27189514]
  7. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  8. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  9. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]