PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS73950.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | G2-like | ||||||||
Protein Properties | Length: 161aa MW: 18400.8 Da PI: 7.2963 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 92.7 | 3e-29 | 1 | 53 | 3 | 55 |
G2-like 3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 rl+W+peLH++F++aveqLGG+e+AtPk+++++m+v+gLtl+h+kSHLQ Rl EPS73950.1 1 RLKWSPELHQKFIDAVEQLGGAERATPKSLMKIMGVQGLTLHHLKSHLQAIRL 53 89***********************************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01557 | 1.1E-20 | 1 | 54 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.6E-8 | 1 | 49 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.08E-12 | 1 | 53 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.912 | 1 | 56 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-25 | 1 | 54 | IPR009057 | Homeodomain-like |
Pfam | PF14379 | 9.4E-19 | 91 | 136 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
RLKWSPELHQ KFIDAVEQLG GAERATPKSL MKIMGVQGLT LHHLKSHLQA IRLGKSQACN 60 HNKQEEDGKY SEKDENGSHE EDRDETYKSL QIKQALEMQM KVESQLHEQL EAQRQLQLRI 120 EAQGKYLQSL LKKSVETLSQ QSSTSIEVDH AKAQLSLLLS F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-20 | 1 | 55 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-20 | 1 | 55 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-20 | 1 | 55 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-20 | 1 | 55 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011075513.1 | 5e-61 | myb family transcription factor PHL8-like | ||||
Swissprot | F4I274 | 5e-49 | PHL8_ARATH; Myb family transcription factor PHL8 | ||||
TrEMBL | S8D3K3 | 1e-111 | S8D3K3_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.L01279.1.p | 5e-59 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6036 | 19 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69580.1 | 4e-41 | G2-like family protein |
Publications ? help Back to Top | |||
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